(23 nodes) Chylomicron remodeling, and High-density lipoprotein particle network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107564103	Microsomal triglyceride transfer protein large subunit-like. (886 aa)
	LOC107564590	Apolipoprotein B-100-like. (2652 aa)
	LOC107582169	Apolipoprotein A-I-like isoform X1. (255 aa)
	LOC107582086	Apolipoprotein A-I-like. (255 aa)
	ENSSGRP00000015803	Apolipoprotein A-I-like. (155 aa)
	LOC107588960	Scavenger receptor class B member 1-like isoform X1. (497 aa)
	LOC107560511	Phospholipid transfer protein-like. (498 aa)
	ENSSGRP00000049681	Apolipoprotein B-100-like. (563 aa)
	ENSSGRP00000051806	annotation not available (422 aa)
	LOC107549128	Apolipoprotein B-100-like. (3758 aa)
	ENSSGRP00000059302	Apolipoprotein B-100-like. (741 aa)
	ENSSGRP00000063318	annotation not available (249 aa)
	LOC107599552	Apolipoprotein Eb-like. (269 aa)
	LOC107599551	Apolipoprotein Eb-like. (269 aa)
	ENSSGRP00000078331	Apolipoprotein B-100-like isoform X1. (3739 aa)
	LOC107596479	Apolipoprotein A-I-like. (255 aa)
	ENSSGRP00000079108	Apolipoprotein Eb-like. (184 aa)
	LOC107595112	Apolipoprotein A-I-like. (255 aa)
	ENSSGRP00000085777	Lecithin-cholesterol acyltransferase. (393 aa)
	ENSSGRP00000086239	Scavenger receptor class B member 1-like. (514 aa)
	apob	Apolipoprotein B-100. (4422 aa)
	LOC107565590	Apolipoprotein Eb-like. (269 aa)
	LOC107557955	Microsomal triglyceride transfer protein large subunit-like. (910 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000015803	ENSSGRP00000049681	ENSSGRP00000015803	ENSSGRP00000049681	Apolipoprotein A-I-like.	Apolipoprotein B-100-like.	0.825
ENSSGRP00000015803	ENSSGRP00000051806	ENSSGRP00000015803	ENSSGRP00000051806	Apolipoprotein A-I-like.	annotation not available	0.773
ENSSGRP00000015803	ENSSGRP00000059302	ENSSGRP00000015803	ENSSGRP00000059302	Apolipoprotein A-I-like.	Apolipoprotein B-100-like.	0.825
ENSSGRP00000015803	ENSSGRP00000078331	ENSSGRP00000015803	ENSSGRP00000078331	Apolipoprotein A-I-like.	Apolipoprotein B-100-like isoform X1.	0.825
ENSSGRP00000015803	ENSSGRP00000085777	ENSSGRP00000015803	ENSSGRP00000085777	Apolipoprotein A-I-like.	Lecithin-cholesterol acyltransferase.	0.861
ENSSGRP00000015803	ENSSGRP00000086239	ENSSGRP00000015803	ENSSGRP00000086239	Apolipoprotein A-I-like.	Scavenger receptor class B member 1-like.	0.741
ENSSGRP00000015803	LOC107549128	ENSSGRP00000015803	ENSSGRP00000056378	Apolipoprotein A-I-like.	Apolipoprotein B-100-like.	0.825
ENSSGRP00000015803	LOC107557955	ENSSGRP00000015803	ENSSGRP00000095184	Apolipoprotein A-I-like.	Microsomal triglyceride transfer protein large subunit-like.	0.477
ENSSGRP00000015803	LOC107560511	ENSSGRP00000015803	ENSSGRP00000048798	Apolipoprotein A-I-like.	Phospholipid transfer protein-like.	0.731
ENSSGRP00000015803	LOC107564103	ENSSGRP00000015803	ENSSGRP00000000764	Apolipoprotein A-I-like.	Microsomal triglyceride transfer protein large subunit-like.	0.477
ENSSGRP00000015803	LOC107564590	ENSSGRP00000015803	ENSSGRP00000013207	Apolipoprotein A-I-like.	Apolipoprotein B-100-like.	0.825
ENSSGRP00000015803	LOC107565590	ENSSGRP00000015803	ENSSGRP00000087566	Apolipoprotein A-I-like.	Apolipoprotein Eb-like.	0.672
ENSSGRP00000015803	LOC107588960	ENSSGRP00000015803	ENSSGRP00000030393	Apolipoprotein A-I-like.	Scavenger receptor class B member 1-like isoform X1.	0.741
ENSSGRP00000015803	LOC107599551	ENSSGRP00000015803	ENSSGRP00000064544	Apolipoprotein A-I-like.	Apolipoprotein Eb-like.	0.672
ENSSGRP00000015803	LOC107599552	ENSSGRP00000015803	ENSSGRP00000064541	Apolipoprotein A-I-like.	Apolipoprotein Eb-like.	0.672
ENSSGRP00000015803	apob	ENSSGRP00000015803	ENSSGRP00000086333	Apolipoprotein A-I-like.	Apolipoprotein B-100.	0.825
ENSSGRP00000049681	ENSSGRP00000015803	ENSSGRP00000049681	ENSSGRP00000015803	Apolipoprotein B-100-like.	Apolipoprotein A-I-like.	0.825
ENSSGRP00000049681	ENSSGRP00000051806	ENSSGRP00000049681	ENSSGRP00000051806	Apolipoprotein B-100-like.	annotation not available	0.850
ENSSGRP00000049681	ENSSGRP00000063318	ENSSGRP00000049681	ENSSGRP00000063318	Apolipoprotein B-100-like.	annotation not available	0.712
ENSSGRP00000049681	ENSSGRP00000079108	ENSSGRP00000049681	ENSSGRP00000079108	Apolipoprotein B-100-like.	Apolipoprotein Eb-like.	0.825