(11 nodes) Mixed, incl. Erythropoietin/thrombopoietin, and Iron transport network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000002503	annotation not available (367 aa)
	ENSSGRP00000009377	annotation not available (155 aa)
	LOC107560292	Erythropoietin-like. (183 aa)
	ENSSGRP00000058698	annotation not available (220 aa)
	LOC107568196	Melanotransferrin-like. (731 aa)
	ENSSGRP00000071631	Transferrin receptor protein 1-like isoform X1. (761 aa)
	LOC107595276	Erythropoietin. (183 aa)
	LOC107586154	Erythropoietin-like isoform X1. (186 aa)
	ENSSGRP00000096788	Erythropoietin receptor. (354 aa)
	LOC107553679	Erythropoietin receptor-like. (534 aa)
	ENSSGRP00000107831	Transferrin receptor protein 1-like isoform X1. (771 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002503	ENSSGRP00000009377	ENSSGRP00000002503	ENSSGRP00000009377	annotation not available	annotation not available	0.854
ENSSGRP00000002503	ENSSGRP00000071631	ENSSGRP00000002503	ENSSGRP00000071631	annotation not available	Transferrin receptor protein 1-like isoform X1.	0.748
ENSSGRP00000002503	ENSSGRP00000107831	ENSSGRP00000002503	ENSSGRP00000107831	annotation not available	Transferrin receptor protein 1-like isoform X1.	0.748
ENSSGRP00000002503	LOC107560292	ENSSGRP00000002503	ENSSGRP00000024523	annotation not available	Erythropoietin-like.	0.862
ENSSGRP00000002503	LOC107586154	ENSSGRP00000002503	ENSSGRP00000096087	annotation not available	Erythropoietin-like isoform X1.	0.854
ENSSGRP00000002503	LOC107595276	ENSSGRP00000002503	ENSSGRP00000082561	annotation not available	Erythropoietin.	0.862
ENSSGRP00000009377	ENSSGRP00000002503	ENSSGRP00000009377	ENSSGRP00000002503	annotation not available	annotation not available	0.854
ENSSGRP00000009377	ENSSGRP00000058698	ENSSGRP00000009377	ENSSGRP00000058698	annotation not available	annotation not available	0.669
ENSSGRP00000009377	ENSSGRP00000096788	ENSSGRP00000009377	ENSSGRP00000096788	annotation not available	Erythropoietin receptor.	0.854
ENSSGRP00000009377	LOC107553679	ENSSGRP00000009377	ENSSGRP00000096800	annotation not available	Erythropoietin receptor-like.	0.854
ENSSGRP00000009377	LOC107568196	ENSSGRP00000009377	ENSSGRP00000061049	annotation not available	Melanotransferrin-like.	0.669
ENSSGRP00000058698	ENSSGRP00000009377	ENSSGRP00000058698	ENSSGRP00000009377	annotation not available	annotation not available	0.669
ENSSGRP00000058698	ENSSGRP00000071631	ENSSGRP00000058698	ENSSGRP00000071631	annotation not available	Transferrin receptor protein 1-like isoform X1.	0.669
ENSSGRP00000058698	ENSSGRP00000107831	ENSSGRP00000058698	ENSSGRP00000107831	annotation not available	Transferrin receptor protein 1-like isoform X1.	0.669
ENSSGRP00000058698	LOC107560292	ENSSGRP00000058698	ENSSGRP00000024523	annotation not available	Erythropoietin-like.	0.669
ENSSGRP00000058698	LOC107586154	ENSSGRP00000058698	ENSSGRP00000096087	annotation not available	Erythropoietin-like isoform X1.	0.669
ENSSGRP00000058698	LOC107595276	ENSSGRP00000058698	ENSSGRP00000082561	annotation not available	Erythropoietin.	0.669
ENSSGRP00000071631	ENSSGRP00000002503	ENSSGRP00000071631	ENSSGRP00000002503	Transferrin receptor protein 1-like isoform X1.	annotation not available	0.748
ENSSGRP00000071631	ENSSGRP00000058698	ENSSGRP00000071631	ENSSGRP00000058698	Transferrin receptor protein 1-like isoform X1.	annotation not available	0.669
ENSSGRP00000071631	ENSSGRP00000096788	ENSSGRP00000071631	ENSSGRP00000096788	Transferrin receptor protein 1-like isoform X1.	Erythropoietin receptor.	0.748