(138 nodes) C-type lectin (CTL) or carbohydrate-recognition domain (CRD), and Keratan sulfate degradation network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000000016	annotation not available (1033 aa)
	ENSSGRP00000000140	Macrophage mannose receptor 1-like. (176 aa)
	ENSSGRP00000001871	Tenascin C. (1709 aa)
	ENSSGRP00000003054	CD209 antigen-like protein C. (175 aa)
	ENSSGRP00000003087	C-type lectin domain family 17, member A-like. (279 aa)
	LOC107550196	Biglycan-like. (370 aa)
	ENSSGRP00000004769	C-type mannose receptor 2-like. (153 aa)
	ENSSGRP00000007359	annotation not available (174 aa)
	ENSSGRP00000008540	annotation not available (161 aa)
	ENSSGRP00000008776	C-type lectin domain family 4 member F-like. (208 aa)
	LOC107559693	C-type lectin domain family 4 member F-like. (173 aa)
	ENSSGRP00000008890	annotation not available (192 aa)
	ENSSGRP00000009372	annotation not available (189 aa)
	ENSSGRP00000009821	Zmp:0000000846. (1933 aa)
	ENSSGRP00000010979	Tenascin C. (1721 aa)
	ENSSGRP00000011010	annotation not available (105 aa)
	ENSSGRP00000011013	annotation not available (330 aa)
	LOC107578379	Keratocan-like. (249 aa)
	ENSSGRP00000011168	annotation not available (225 aa)
	LOC107565637	Lumican-like. (344 aa)
	ENSSGRP00000011841	C-type lectin domain family 3, member Bb. (151 aa)
	ENSSGRP00000011842	C-type lectin domain family 3, member Bb. (151 aa)
	ENSSGRP00000012010	Biglycan-like. (330 aa)
	ENSSGRP00000012017	Fibronectin-like. (2208 aa)
	ENSSGRP00000012295	annotation not available (244 aa)
	ENSSGRP00000012327	Low affinity immunoglobulin epsilon Fc receptor-like. (121 aa)
	ENSSGRP00000012771	Fibroleukin-like isoform X1. (196 aa)
	ENSSGRP00000013190	C-type lectin lectoxin-Phi1-like. (142 aa)
	ENSSGRP00000013967	CD209 antigen-like protein C isoform X1. (257 aa)
	ENSSGRP00000014716	annotation not available (153 aa)
	ENSSGRP00000017247	Ladderlectin-like. (155 aa)
	LOC107576740	Ladderlectin-like. (152 aa)
	ENSSGRP00000018588	annotation not available (191 aa)
	LOC107562407	C-type lectin domain family 3 member B. (197 aa)
	LOC107576881	Galactose-specific lectin nattectin-like. (176 aa)
	ENSSGRP00000019654	annotation not available (184 aa)
	ENSSGRP00000021405	annotation not available (156 aa)
	ENSSGRP00000021410	annotation not available (165 aa)
	ENSSGRP00000022054	annotation not available (219 aa)
	ENSSGRP00000022169	annotation not available (200 aa)
	ENSSGRP00000023609	annotation not available (327 aa)
	ENSSGRP00000026424	Leucine-rich repeat protein 1-like. (330 aa)
	LOC107549484	CD209 antigen-like protein D isoform X1. (221 aa)
	ENSSGRP00000028627	annotation not available (227 aa)
	LOC107587216	Periostin-like. (836 aa)
	ENSSGRP00000030247	annotation not available (171 aa)
	LOC107593448	Biglycan-like. (260 aa)
	LOC107551672	C-type lectin domain family 4 member E. (264 aa)
	HAPLN1	Hyaluronan and proteoglycan link protein 1-like. (353 aa)
	ENSSGRP00000035805	Versican b. (1520 aa)
	LOC107598319	SPARC-like. (304 aa)
	ENSSGRP00000038370	Periostin, osteoblast specific factor b. (773 aa)
	ENSSGRP00000038911	annotation not available (293 aa)
	ENSSGRP00000038918	Aggrecan core protein-like. (356 aa)
	LOC107554434	C-type lectin domain family 4 member E-like. (214 aa)
	ENSSGRP00000041018	annotation not available (227 aa)
	ENSSGRP00000041384	Osteoglycin (osteoinductive factor, mimecan). (245 aa)
	ENSSGRP00000041497	annotation not available (152 aa)
	LOC107596099	Keratocan-like. (362 aa)
	LOC107585613	Lumican-like. (344 aa)
	ENSSGRP00000043712	CD209 antigen-like protein C. (118 aa)
	ENSSGRP00000043714	annotation not available (163 aa)
	ENSSGRP00000043715	CD209 antigen-like protein D. (202 aa)
	LOC107598399	CD209 antigen-like protein D. (261 aa)
	LOC107590186	Proline arginine-rich end leucine-rich repeat protein. (380 aa)
	LOC107560871	Osteoglycin (osteoinductive factor, mimecan). (257 aa)
	LOC107569858	Hyaluronan and proteoglycan link protein 1-like isoform X1. (328 aa)
	ENSSGRP00000047680	Versican a. (282 aa)
	ENSSGRP00000047681	Versican core protein-like. (340 aa)
	ENSSGRP00000050768	Galactose-specific lectin nattectin-like. (164 aa)
	ENSSGRP00000050851	C-type mannose receptor 2-like. (139 aa)
	LOC107586921	Osteoglycin (osteoinductive factor, mimecan). (289 aa)
	ENSSGRP00000051100	Osteomodulin. (296 aa)
	aspn	Asporin. (370 aa)
	ENSSGRP00000051408	annotation not available (178 aa)
	ENSSGRP00000051410	annotation not available (154 aa)
	LOC107560944	Biglycan-like. (371 aa)
	ENSSGRP00000052547	Si:ch211-193e13.5. (301 aa)
	ENSSGRP00000052874	Aggrecan b. (659 aa)
	ENSSGRP00000052879	annotation not available (204 aa)
	ENSSGRP00000054368	annotation not available (940 aa)
	ENSSGRP00000054371	annotation not available (110 aa)
	ENSSGRP00000057154	Neurocan core protein-like. (326 aa)
	ENSSGRP00000059559	annotation not available (184 aa)
	ENSSGRP00000059565	annotation not available (153 aa)
	ENSSGRP00000059567	Macrophage mannose receptor 1-like. (149 aa)
	ENSSGRP00000059577	annotation not available (132 aa)
	ENSSGRP00000059578	Secretory phospholipase A2 receptor-like. (195 aa)
	ENSSGRP00000059585	annotation not available (164 aa)
	ENSSGRP00000059590	CD209 antigen-like protein 2. (169 aa)
	ENSSGRP00000062123	Periostin-like. (775 aa)
	LOC107558359	tenascin-R-like. (1323 aa)
	ENSSGRP00000064359	Tenascin N. (922 aa)
	adamts5	A disintegrin and metalloproteinase with thrombospondin motifs 5. (896 aa)
	ENSSGRP00000072717	annotation not available (210 aa)
	ENSSGRP00000072719	annotation not available (159 aa)
	ENSSGRP00000072720	annotation not available (265 aa)
	LOC107567203	Secreted protein acidic and rich in cysteine. (292 aa)
	ENSSGRP00000074288	annotation not available (237 aa)
	ENSSGRP00000074298	annotation not available (251 aa)
	ENSSGRP00000074306	annotation not available (257 aa)
	ENSSGRP00000074308	C-type lectin domain family 4 member M. (158 aa)
	LOC107561628	Hyaluronan and proteoglycan link protein 1-like isoform X1. (328 aa)
	LOC107555732	Carbohydrate sulfotransferase 6-like. (397 aa)
	LOC107555690	Carbohydrate sulfotransferase 6-like. (369 aa)
	OMD	Osteomodulin. (394 aa)
	ogn	Osteoglycin (osteoinductive factor, mimecan). (289 aa)
	ENSSGRP00000077534	Brevican. (1301 aa)
	LOC107569406	Protein-lysine 6-oxidase-like. (413 aa)
	ENSSGRP00000080289	ST3 beta-galactoside alpha-2,3-sialyltransferase 3b. (332 aa)
	ENSSGRP00000081922	annotation not available (255 aa)
	ENSSGRP00000082161	annotation not available (186 aa)
	ENSSGRP00000082163	Versican core protein-like. (312 aa)
	HAPLN1-2	Hyaluronan and proteoglycan link protein 1-like. (353 aa)
	LOC107555184	Periostin-like isoform X1. (1131 aa)
	ENSSGRP00000086843	annotation not available (178 aa)
	LOC107555136	CD209 antigen-like protein C. (300 aa)
	ENSSGRP00000089868	Zmp:0000000846. (1674 aa)
	ENSSGRP00000091078	Brevican core protein-like isoform X1. (1257 aa)
	LOC107555878	Proline arginine-rich end leucine-rich repeat protein. (389 aa)
	ENSSGRP00000092458	annotation not available (1130 aa)
	LOC107560083	Carbohydrate sulfotransferase 6-like. (455 aa)
	ENSSGRP00000093842	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like. (3450 aa)
	ENSSGRP00000094850	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like. (3520 aa)
	ENSSGRP00000100157	Galactose-specific lectin nattectin-like. (147 aa)
	ENSSGRP00000100840	Aggrecan core protein-like isoform X1. (398 aa)
	ENSSGRP00000100841	annotation not available (136 aa)
	ENSSGRP00000100856	annotation not available (176 aa)
	ENSSGRP00000101301	Neurocan b. (927 aa)
	ENSSGRP00000101832	annotation not available (151 aa)
	ENSSGRP00000102182	Aggrecan a. (476 aa)
	LOC107549855	CD209 antigen-like protein C. (278 aa)
	ADAMTS5	A disintegrin and metalloproteinase with thrombospondin motifs 5-like. (858 aa)
	ENSSGRP00000105404	Galactose-specific lectin nattectin-like. (152 aa)
	LOC107569863	Galactose-specific lectin nattectin-like. (154 aa)
	ENSSGRP00000105814	annotation not available (150 aa)
	ENSSGRP00000112720	Fibromodulin-like. (317 aa)
	LOC107550941	C-type lectin domain family 4 member E-like. (209 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADAMTS5	ENSSGRP00000038911	ENSSGRP00000104737	ENSSGRP00000038911	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	annotation not available	0.598
ADAMTS5	ENSSGRP00000038918	ENSSGRP00000104737	ENSSGRP00000038918	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	Aggrecan core protein-like.	0.598
ADAMTS5	ENSSGRP00000047680	ENSSGRP00000104737	ENSSGRP00000047680	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	Versican a.	0.579
ADAMTS5	ENSSGRP00000047681	ENSSGRP00000104737	ENSSGRP00000047681	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	Versican core protein-like.	0.579
ADAMTS5	ENSSGRP00000052874	ENSSGRP00000104737	ENSSGRP00000052874	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	Aggrecan b.	0.598
ADAMTS5	ENSSGRP00000052879	ENSSGRP00000104737	ENSSGRP00000052879	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	annotation not available	0.598
ADAMTS5	ENSSGRP00000077534	ENSSGRP00000104737	ENSSGRP00000077534	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	Brevican.	0.884
ADAMTS5	ENSSGRP00000091078	ENSSGRP00000104737	ENSSGRP00000091078	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	Brevican core protein-like isoform X1.	0.884
ADAMTS5	ENSSGRP00000100840	ENSSGRP00000104737	ENSSGRP00000100840	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	Aggrecan core protein-like isoform X1.	0.598
ADAMTS5	ENSSGRP00000100841	ENSSGRP00000104737	ENSSGRP00000100841	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	annotation not available	0.598
ADAMTS5	ENSSGRP00000100856	ENSSGRP00000104737	ENSSGRP00000100856	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	annotation not available	0.598
ADAMTS5	ENSSGRP00000102182	ENSSGRP00000104737	ENSSGRP00000102182	A disintegrin and metalloproteinase with thrombospondin motifs 5-like.	Aggrecan a.	0.598
ENSSGRP00000001871	ENSSGRP00000007359	ENSSGRP00000001871	ENSSGRP00000007359	Tenascin C.	annotation not available	0.480
ENSSGRP00000001871	ENSSGRP00000009821	ENSSGRP00000001871	ENSSGRP00000009821	Tenascin C.	Zmp:0000000846.	0.490
ENSSGRP00000001871	ENSSGRP00000010979	ENSSGRP00000001871	ENSSGRP00000010979	Tenascin C.	Tenascin C.	0.486
ENSSGRP00000001871	ENSSGRP00000012771	ENSSGRP00000001871	ENSSGRP00000012771	Tenascin C.	Fibroleukin-like isoform X1.	0.480
ENSSGRP00000001871	ENSSGRP00000035805	ENSSGRP00000001871	ENSSGRP00000035805	Tenascin C.	Versican b.	0.451
ENSSGRP00000001871	ENSSGRP00000038911	ENSSGRP00000001871	ENSSGRP00000038911	Tenascin C.	annotation not available	0.728
ENSSGRP00000001871	ENSSGRP00000038918	ENSSGRP00000001871	ENSSGRP00000038918	Tenascin C.	Aggrecan core protein-like.	0.728
ENSSGRP00000001871	ENSSGRP00000041018	ENSSGRP00000001871	ENSSGRP00000041018	Tenascin C.	annotation not available	0.480