(18 nodes) NCAM1 interactions, and Regulation of commissural axon pathfinding by SLIT and ROBO network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000002910	Neurocan core protein-like. (665 aa)
	ENSSGRP00000010849	Nephronectin a. (602 aa)
	ENSSGRP00000016158	Neural cell adhesion molecule 1b. (1036 aa)
	ENSSGRP00000020739	annotation not available (357 aa)
	LOC107598824	Neuroplastin-like isoform X1. (393 aa)
	ENSSGRP00000033858	Neural cell adhesion molecule 1-like. (873 aa)
	LOC107549020	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8B). (379 aa)
	LOC107560405	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8D). (361 aa)
	LOC107558264	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8D). (380 aa)
	LOC107553363	Neuroplastin-like. (397 aa)
	ENSSGRP00000052711	Neural cell adhesion molecule 2-like. (772 aa)
	LOC107601633	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8B). (364 aa)
	ENSSGRP00000085452	Neural cell adhesion molecule 1b. (884 aa)
	LOC107573733	Neuroplastin-like. (393 aa)
	ENSSGRP00000095884	Neuroplastin-like isoform X1. (378 aa)
	ENSSGRP00000096259	annotation not available (224 aa)
	ENSSGRP00000101813	Integrin alpha-8-like. (143 aa)
	ENSSGRP00000106381	Neural cell adhesion molecule 1-B-like. (578 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002910	ENSSGRP00000016158	ENSSGRP00000002910	ENSSGRP00000016158	Neurocan core protein-like.	Neural cell adhesion molecule 1b.	0.440
ENSSGRP00000002910	ENSSGRP00000020739	ENSSGRP00000002910	ENSSGRP00000020739	Neurocan core protein-like.	annotation not available	0.440
ENSSGRP00000002910	ENSSGRP00000033858	ENSSGRP00000002910	ENSSGRP00000033858	Neurocan core protein-like.	Neural cell adhesion molecule 1-like.	0.440
ENSSGRP00000002910	ENSSGRP00000052711	ENSSGRP00000002910	ENSSGRP00000052711	Neurocan core protein-like.	Neural cell adhesion molecule 2-like.	0.440
ENSSGRP00000002910	ENSSGRP00000085452	ENSSGRP00000002910	ENSSGRP00000085452	Neurocan core protein-like.	Neural cell adhesion molecule 1b.	0.440
ENSSGRP00000002910	ENSSGRP00000096259	ENSSGRP00000002910	ENSSGRP00000096259	Neurocan core protein-like.	annotation not available	0.440
ENSSGRP00000002910	ENSSGRP00000106381	ENSSGRP00000002910	ENSSGRP00000106381	Neurocan core protein-like.	Neural cell adhesion molecule 1-B-like.	0.440
ENSSGRP00000010849	ENSSGRP00000095884	ENSSGRP00000010849	ENSSGRP00000095884	Nephronectin a.	Neuroplastin-like isoform X1.	0.497
ENSSGRP00000010849	ENSSGRP00000101813	ENSSGRP00000010849	ENSSGRP00000101813	Nephronectin a.	Integrin alpha-8-like.	0.640
ENSSGRP00000010849	LOC107553363	ENSSGRP00000010849	ENSSGRP00000048092	Nephronectin a.	Neuroplastin-like.	0.497
ENSSGRP00000016158	ENSSGRP00000002910	ENSSGRP00000016158	ENSSGRP00000002910	Neural cell adhesion molecule 1b.	Neurocan core protein-like.	0.440
ENSSGRP00000016158	LOC107549020	ENSSGRP00000016158	ENSSGRP00000034748	Neural cell adhesion molecule 1b.	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8B).	0.533
ENSSGRP00000016158	LOC107558264	ENSSGRP00000016158	ENSSGRP00000043568	Neural cell adhesion molecule 1b.	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8D).	0.533
ENSSGRP00000016158	LOC107560405	ENSSGRP00000016158	ENSSGRP00000040714	Neural cell adhesion molecule 1b.	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8D).	0.533
ENSSGRP00000016158	LOC107601633	ENSSGRP00000016158	ENSSGRP00000061403	Neural cell adhesion molecule 1b.	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8B).	0.533
ENSSGRP00000020739	ENSSGRP00000002910	ENSSGRP00000020739	ENSSGRP00000002910	annotation not available	Neurocan core protein-like.	0.440
ENSSGRP00000020739	LOC107549020	ENSSGRP00000020739	ENSSGRP00000034748	annotation not available	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8B).	0.530
ENSSGRP00000020739	LOC107558264	ENSSGRP00000020739	ENSSGRP00000043568	annotation not available	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8D).	0.530
ENSSGRP00000020739	LOC107560405	ENSSGRP00000020739	ENSSGRP00000040714	annotation not available	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8D).	0.530
ENSSGRP00000020739	LOC107601633	ENSSGRP00000020739	ENSSGRP00000061403	annotation not available	Alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8B).	0.530