(12 nodes) Spectrin, and Domain present in ZO-1 and Unc5-like netrin receptors network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000005197	annotation not available (81 aa)
	ENSSGRP00000006964	annotation not available (71 aa)
	ENSSGRP00000013618	Ankyrin-2-like isoform X1. (4324 aa)
	ENSSGRP00000013989	Ankyrin-3-like. (3785 aa)
	ENSSGRP00000017511	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like. (80 aa)
	ENSSGRP00000041244	LOW QUALITY PROTEIN: ankyrin-2-like. (3384 aa)
	ENSSGRP00000046559	annotation not available (142 aa)
	ENSSGRP00000065087	annotation not available (1370 aa)
	sptbn5	Spectrin beta chain, non-erythrocytic 5. (4038 aa)
	ENSSGRP00000094294	annotation not available (715 aa)
	ENSSGRP00000106064	annotation not available (549 aa)
	ENSSGRP00000106069	LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 4-like. (680 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005197	ENSSGRP00000013618	ENSSGRP00000005197	ENSSGRP00000013618	annotation not available	Ankyrin-2-like isoform X1.	0.528
ENSSGRP00000005197	ENSSGRP00000013989	ENSSGRP00000005197	ENSSGRP00000013989	annotation not available	Ankyrin-3-like.	0.528
ENSSGRP00000005197	ENSSGRP00000017511	ENSSGRP00000005197	ENSSGRP00000017511	annotation not available	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like.	0.528
ENSSGRP00000005197	ENSSGRP00000041244	ENSSGRP00000005197	ENSSGRP00000041244	annotation not available	LOW QUALITY PROTEIN: ankyrin-2-like.	0.528
ENSSGRP00000005197	ENSSGRP00000046559	ENSSGRP00000005197	ENSSGRP00000046559	annotation not available	annotation not available	0.528
ENSSGRP00000005197	ENSSGRP00000065087	ENSSGRP00000005197	ENSSGRP00000065087	annotation not available	annotation not available	0.461
ENSSGRP00000005197	ENSSGRP00000094294	ENSSGRP00000005197	ENSSGRP00000094294	annotation not available	annotation not available	0.528
ENSSGRP00000006964	ENSSGRP00000013618	ENSSGRP00000006964	ENSSGRP00000013618	annotation not available	Ankyrin-2-like isoform X1.	0.528
ENSSGRP00000006964	ENSSGRP00000013989	ENSSGRP00000006964	ENSSGRP00000013989	annotation not available	Ankyrin-3-like.	0.528
ENSSGRP00000006964	ENSSGRP00000017511	ENSSGRP00000006964	ENSSGRP00000017511	annotation not available	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like.	0.528
ENSSGRP00000006964	ENSSGRP00000041244	ENSSGRP00000006964	ENSSGRP00000041244	annotation not available	LOW QUALITY PROTEIN: ankyrin-2-like.	0.528
ENSSGRP00000006964	ENSSGRP00000046559	ENSSGRP00000006964	ENSSGRP00000046559	annotation not available	annotation not available	0.528
ENSSGRP00000006964	ENSSGRP00000094294	ENSSGRP00000006964	ENSSGRP00000094294	annotation not available	annotation not available	0.528
ENSSGRP00000013618	ENSSGRP00000005197	ENSSGRP00000013618	ENSSGRP00000005197	Ankyrin-2-like isoform X1.	annotation not available	0.528
ENSSGRP00000013618	ENSSGRP00000006964	ENSSGRP00000013618	ENSSGRP00000006964	Ankyrin-2-like isoform X1.	annotation not available	0.528
ENSSGRP00000013618	ENSSGRP00000065087	ENSSGRP00000013618	ENSSGRP00000065087	Ankyrin-2-like isoform X1.	annotation not available	0.528
ENSSGRP00000013618	ENSSGRP00000106064	ENSSGRP00000013618	ENSSGRP00000106064	Ankyrin-2-like isoform X1.	annotation not available	0.528
ENSSGRP00000013618	ENSSGRP00000106069	ENSSGRP00000013618	ENSSGRP00000106069	Ankyrin-2-like isoform X1.	LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 4-like.	0.528
ENSSGRP00000013618	sptbn5	ENSSGRP00000013618	ENSSGRP00000076423	Ankyrin-2-like isoform X1.	Spectrin beta chain, non-erythrocytic 5.	0.528
ENSSGRP00000013989	ENSSGRP00000005197	ENSSGRP00000013989	ENSSGRP00000005197	Ankyrin-3-like.	annotation not available	0.528