(15 nodes) Mixed, incl. The CUT domain is a DNA-binding domain often found in combination with a downstream homeodomain., and Deoxyribonuclease I activity network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107552684	One cut domain family member 2-like. (439 aa)
	EMX1	Empty spiracles homeobox 1. (192 aa)
	LOC107572774	Reprimo, TP53-dependent G2 arrest mediator candidate. (104 aa)
	ENSSGRP00000004983	annotation not available (105 aa)
	EVX1	Homeobox even-skipped homolog protein. (238 aa)
	ENSSGRP00000021393	Deoxyribonuclease I. (258 aa)
	lins1	Protein Lines homolog 1. (626 aa)
	LOC107549031	Reprimo, TP53-dependent G2 arrest mediator candidate. (103 aa)
	LOC107585297	Homeobox protein EMX2 isoform X1. (247 aa)
	ENSSGRP00000058812	Hepatocyte nuclear factor 6-like. (444 aa)
	LOC107560585	Zinc finger protein ZIC 3-like. (447 aa)
	LOC107549809	One cut domain family member 2-like. (440 aa)
	LOC107568632	Deoxyribonuclease-1-like. (286 aa)
	LOC107596910	Hepatocyte nuclear factor 6-like. (453 aa)
	ENSSGRP00000098425	annotation not available (150 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EMX1	ENSSGRP00000098425	ENSSGRP00000000426	ENSSGRP00000098425	Empty spiracles homeobox 1.	annotation not available	0.657
ENSSGRP00000004983	ENSSGRP00000098425	ENSSGRP00000004983	ENSSGRP00000098425	annotation not available	annotation not available	0.516
ENSSGRP00000004983	lins1	ENSSGRP00000004983	ENSSGRP00000029607	annotation not available	Protein Lines homolog 1.	0.448
ENSSGRP00000098425	EMX1	ENSSGRP00000098425	ENSSGRP00000000426	annotation not available	Empty spiracles homeobox 1.	0.657
ENSSGRP00000098425	ENSSGRP00000004983	ENSSGRP00000098425	ENSSGRP00000004983	annotation not available	annotation not available	0.516
ENSSGRP00000098425	EVX1	ENSSGRP00000098425	ENSSGRP00000014337	annotation not available	Homeobox even-skipped homolog protein.	0.540
ENSSGRP00000098425	LOC107549031	ENSSGRP00000098425	ENSSGRP00000044426	annotation not available	Reprimo, TP53-dependent G2 arrest mediator candidate.	0.531
ENSSGRP00000098425	LOC107572774	ENSSGRP00000098425	ENSSGRP00000004052	annotation not available	Reprimo, TP53-dependent G2 arrest mediator candidate.	0.529
ENSSGRP00000098425	LOC107585297	ENSSGRP00000098425	ENSSGRP00000049329	annotation not available	Homeobox protein EMX2 isoform X1.	0.619
EVX1	ENSSGRP00000098425	ENSSGRP00000014337	ENSSGRP00000098425	Homeobox even-skipped homolog protein.	annotation not available	0.540
LOC107549031	ENSSGRP00000098425	ENSSGRP00000044426	ENSSGRP00000098425	Reprimo, TP53-dependent G2 arrest mediator candidate.	annotation not available	0.531
LOC107549031	lins1	ENSSGRP00000044426	ENSSGRP00000029607	Reprimo, TP53-dependent G2 arrest mediator candidate.	Protein Lines homolog 1.	0.616
LOC107572774	ENSSGRP00000098425	ENSSGRP00000004052	ENSSGRP00000098425	Reprimo, TP53-dependent G2 arrest mediator candidate.	annotation not available	0.529
LOC107572774	lins1	ENSSGRP00000004052	ENSSGRP00000029607	Reprimo, TP53-dependent G2 arrest mediator candidate.	Protein Lines homolog 1.	0.616
LOC107585297	ENSSGRP00000098425	ENSSGRP00000049329	ENSSGRP00000098425	Homeobox protein EMX2 isoform X1.	annotation not available	0.619
lins1	ENSSGRP00000004983	ENSSGRP00000029607	ENSSGRP00000004983	Protein Lines homolog 1.	annotation not available	0.448
lins1	LOC107549031	ENSSGRP00000029607	ENSSGRP00000044426	Protein Lines homolog 1.	Reprimo, TP53-dependent G2 arrest mediator candidate.	0.616
lins1	LOC107572774	ENSSGRP00000029607	ENSSGRP00000004052	Protein Lines homolog 1.	Reprimo, TP53-dependent G2 arrest mediator candidate.	0.616