(10 nodes) COMM domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	commd2	COMM domain-containing protein 2 isoform X1. (199 aa)
	LOC107571369	COMM domain-containing protein 5-like. (205 aa)
	commd10	COMM domain-containing protein 10. (236 aa)
	LOC107598913	COMM domain-containing protein 4-like. (227 aa)
	ENSSGRP00000057128	COMM domain containing 9. (145 aa)
	LOC107549645	Coiled-coil domain-containing protein 22-like isoform X1. (639 aa)
	LOC107549189	COMM domain-containing protein 3-like. (192 aa)
	LOC107594359	COMM domain-containing protein 1-like. (191 aa)
	LOC107556927	COMM domain-containing protein 8-like. (191 aa)
	commd6	COMM domain-containing protein 6. (199 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000057128	LOC107549189	ENSSGRP00000057128	ENSSGRP00000069579	COMM domain containing 9.	COMM domain-containing protein 3-like.	0.924
ENSSGRP00000057128	LOC107549645	ENSSGRP00000057128	ENSSGRP00000061927	COMM domain containing 9.	Coiled-coil domain-containing protein 22-like isoform X1.	0.943
ENSSGRP00000057128	LOC107556927	ENSSGRP00000057128	ENSSGRP00000098635	COMM domain containing 9.	COMM domain-containing protein 8-like.	0.911
ENSSGRP00000057128	LOC107571369	ENSSGRP00000057128	ENSSGRP00000031318	COMM domain containing 9.	COMM domain-containing protein 5-like.	0.918
ENSSGRP00000057128	LOC107594359	ENSSGRP00000057128	ENSSGRP00000090582	COMM domain containing 9.	COMM domain-containing protein 1-like.	0.929
ENSSGRP00000057128	LOC107598913	ENSSGRP00000057128	ENSSGRP00000036708	COMM domain containing 9.	COMM domain-containing protein 4-like.	0.947
ENSSGRP00000057128	commd10	ENSSGRP00000057128	ENSSGRP00000035589	COMM domain containing 9.	COMM domain-containing protein 10.	0.958
ENSSGRP00000057128	commd2	ENSSGRP00000057128	ENSSGRP00000013770	COMM domain containing 9.	COMM domain-containing protein 2 isoform X1.	0.969
ENSSGRP00000057128	commd6	ENSSGRP00000057128	ENSSGRP00000103569	COMM domain containing 9.	COMM domain-containing protein 6.	0.997
LOC107549189	ENSSGRP00000057128	ENSSGRP00000069579	ENSSGRP00000057128	COMM domain-containing protein 3-like.	COMM domain containing 9.	0.924
LOC107549189	LOC107549645	ENSSGRP00000069579	ENSSGRP00000061927	COMM domain-containing protein 3-like.	Coiled-coil domain-containing protein 22-like isoform X1.	0.945
LOC107549189	LOC107556927	ENSSGRP00000069579	ENSSGRP00000098635	COMM domain-containing protein 3-like.	COMM domain-containing protein 8-like.	0.853
LOC107549189	LOC107571369	ENSSGRP00000069579	ENSSGRP00000031318	COMM domain-containing protein 3-like.	COMM domain-containing protein 5-like.	0.921
LOC107549189	LOC107594359	ENSSGRP00000069579	ENSSGRP00000090582	COMM domain-containing protein 3-like.	COMM domain-containing protein 1-like.	0.934
LOC107549189	LOC107598913	ENSSGRP00000069579	ENSSGRP00000036708	COMM domain-containing protein 3-like.	COMM domain-containing protein 4-like.	0.901
LOC107549189	commd10	ENSSGRP00000069579	ENSSGRP00000035589	COMM domain-containing protein 3-like.	COMM domain-containing protein 10.	0.970
LOC107549189	commd2	ENSSGRP00000069579	ENSSGRP00000013770	COMM domain-containing protein 3-like.	COMM domain-containing protein 2 isoform X1.	0.976
LOC107549189	commd6	ENSSGRP00000069579	ENSSGRP00000103569	COMM domain-containing protein 3-like.	COMM domain-containing protein 6.	0.977
LOC107549645	ENSSGRP00000057128	ENSSGRP00000061927	ENSSGRP00000057128	Coiled-coil domain-containing protein 22-like isoform X1.	COMM domain containing 9.	0.943
LOC107549645	LOC107549189	ENSSGRP00000061927	ENSSGRP00000069579	Coiled-coil domain-containing protein 22-like isoform X1.	COMM domain-containing protein 3-like.	0.945