(5 nodes) COMM domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	commd2	COMM domain-containing protein 2 isoform X1. (199 aa)
	LOC107571369	COMM domain-containing protein 5-like. (205 aa)
	commd10	COMM domain-containing protein 10. (236 aa)
	LOC107549645	Coiled-coil domain-containing protein 22-like isoform X1. (639 aa)
	LOC107594359	COMM domain-containing protein 1-like. (191 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107549645	LOC107571369	ENSSGRP00000061927	ENSSGRP00000031318	Coiled-coil domain-containing protein 22-like isoform X1.	COMM domain-containing protein 5-like.	0.977
LOC107549645	LOC107594359	ENSSGRP00000061927	ENSSGRP00000090582	Coiled-coil domain-containing protein 22-like isoform X1.	COMM domain-containing protein 1-like.	0.966
LOC107549645	commd10	ENSSGRP00000061927	ENSSGRP00000035589	Coiled-coil domain-containing protein 22-like isoform X1.	COMM domain-containing protein 10.	0.997
LOC107549645	commd2	ENSSGRP00000061927	ENSSGRP00000013770	Coiled-coil domain-containing protein 22-like isoform X1.	COMM domain-containing protein 2 isoform X1.	0.997
LOC107571369	LOC107549645	ENSSGRP00000031318	ENSSGRP00000061927	COMM domain-containing protein 5-like.	Coiled-coil domain-containing protein 22-like isoform X1.	0.977
LOC107571369	LOC107594359	ENSSGRP00000031318	ENSSGRP00000090582	COMM domain-containing protein 5-like.	COMM domain-containing protein 1-like.	0.971
LOC107571369	commd10	ENSSGRP00000031318	ENSSGRP00000035589	COMM domain-containing protein 5-like.	COMM domain-containing protein 10.	0.996
LOC107571369	commd2	ENSSGRP00000031318	ENSSGRP00000013770	COMM domain-containing protein 5-like.	COMM domain-containing protein 2 isoform X1.	0.997
LOC107594359	LOC107549645	ENSSGRP00000090582	ENSSGRP00000061927	COMM domain-containing protein 1-like.	Coiled-coil domain-containing protein 22-like isoform X1.	0.966
LOC107594359	LOC107571369	ENSSGRP00000090582	ENSSGRP00000031318	COMM domain-containing protein 1-like.	COMM domain-containing protein 5-like.	0.971
LOC107594359	commd10	ENSSGRP00000090582	ENSSGRP00000035589	COMM domain-containing protein 1-like.	COMM domain-containing protein 10.	0.977
LOC107594359	commd2	ENSSGRP00000090582	ENSSGRP00000013770	COMM domain-containing protein 1-like.	COMM domain-containing protein 2 isoform X1.	0.981
commd10	LOC107549645	ENSSGRP00000035589	ENSSGRP00000061927	COMM domain-containing protein 10.	Coiled-coil domain-containing protein 22-like isoform X1.	0.997
commd10	LOC107571369	ENSSGRP00000035589	ENSSGRP00000031318	COMM domain-containing protein 10.	COMM domain-containing protein 5-like.	0.996
commd10	LOC107594359	ENSSGRP00000035589	ENSSGRP00000090582	COMM domain-containing protein 10.	COMM domain-containing protein 1-like.	0.977
commd10	commd2	ENSSGRP00000035589	ENSSGRP00000013770	COMM domain-containing protein 10.	COMM domain-containing protein 2 isoform X1.	0.999
commd2	LOC107549645	ENSSGRP00000013770	ENSSGRP00000061927	COMM domain-containing protein 2 isoform X1.	Coiled-coil domain-containing protein 22-like isoform X1.	0.997
commd2	LOC107571369	ENSSGRP00000013770	ENSSGRP00000031318	COMM domain-containing protein 2 isoform X1.	COMM domain-containing protein 5-like.	0.997
commd2	LOC107594359	ENSSGRP00000013770	ENSSGRP00000090582	COMM domain-containing protein 2 isoform X1.	COMM domain-containing protein 1-like.	0.981
commd2	commd10	ENSSGRP00000013770	ENSSGRP00000035589	COMM domain-containing protein 2 isoform X1.	COMM domain-containing protein 10.	0.999