(11 nodes) Mixed, incl. Hemangioblast cell differentiation, and LIM-domain binding protein network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107552693	Transcription factor E2-alpha-like isoform X1. (600 aa)
	ENSSGRP00000005880	T-cell acute lymphocytic leukemia protein 1 homolog. (183 aa)
	LOC107571884	Runt-related transcription factor 1-like isoform X1. (456 aa)
	ENSSGRP00000028725	annotation not available (449 aa)
	LOC107554475	Rhombotin-2. (182 aa)
	ENSSGRP00000051536	Core-binding factor subunit beta. (78 aa)
	LOC107585322	LIM domain-binding protein 1-A isoform X1. (421 aa)
	ENSSGRP00000056021	GATA-binding factor 1-A-like. (88 aa)
	LOC107567630	LIM domain-binding protein 1-like isoform X1. (410 aa)
	ENSSGRP00000071108	T-cell acute lymphocytic leukemia 1. (324 aa)
	LOC107554555	Rhombotin-2-like. (159 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005880	ENSSGRP00000028725	ENSSGRP00000005880	ENSSGRP00000028725	T-cell acute lymphocytic leukemia protein 1 homolog.	annotation not available	0.836
ENSSGRP00000005880	ENSSGRP00000051536	ENSSGRP00000005880	ENSSGRP00000051536	T-cell acute lymphocytic leukemia protein 1 homolog.	Core-binding factor subunit beta.	0.650
ENSSGRP00000005880	ENSSGRP00000056021	ENSSGRP00000005880	ENSSGRP00000056021	T-cell acute lymphocytic leukemia protein 1 homolog.	GATA-binding factor 1-A-like.	0.838
ENSSGRP00000005880	LOC107552693	ENSSGRP00000005880	ENSSGRP00000000479	T-cell acute lymphocytic leukemia protein 1 homolog.	Transcription factor E2-alpha-like isoform X1.	0.836
ENSSGRP00000005880	LOC107554475	ENSSGRP00000005880	ENSSGRP00000041959	T-cell acute lymphocytic leukemia protein 1 homolog.	Rhombotin-2.	0.986
ENSSGRP00000005880	LOC107554555	ENSSGRP00000005880	ENSSGRP00000078367	T-cell acute lymphocytic leukemia protein 1 homolog.	Rhombotin-2-like.	0.986
ENSSGRP00000005880	LOC107567630	ENSSGRP00000005880	ENSSGRP00000066857	T-cell acute lymphocytic leukemia protein 1 homolog.	LIM domain-binding protein 1-like isoform X1.	0.931
ENSSGRP00000005880	LOC107571884	ENSSGRP00000005880	ENSSGRP00000023743	T-cell acute lymphocytic leukemia protein 1 homolog.	Runt-related transcription factor 1-like isoform X1.	0.827
ENSSGRP00000005880	LOC107585322	ENSSGRP00000005880	ENSSGRP00000051602	T-cell acute lymphocytic leukemia protein 1 homolog.	LIM domain-binding protein 1-A isoform X1.	0.931
ENSSGRP00000028725	ENSSGRP00000005880	ENSSGRP00000028725	ENSSGRP00000005880	annotation not available	T-cell acute lymphocytic leukemia protein 1 homolog.	0.836
ENSSGRP00000028725	ENSSGRP00000051536	ENSSGRP00000028725	ENSSGRP00000051536	annotation not available	Core-binding factor subunit beta.	0.525
ENSSGRP00000028725	ENSSGRP00000056021	ENSSGRP00000028725	ENSSGRP00000056021	annotation not available	GATA-binding factor 1-A-like.	0.658
ENSSGRP00000028725	ENSSGRP00000071108	ENSSGRP00000028725	ENSSGRP00000071108	annotation not available	T-cell acute lymphocytic leukemia 1.	0.918
ENSSGRP00000028725	LOC107554475	ENSSGRP00000028725	ENSSGRP00000041959	annotation not available	Rhombotin-2.	0.885
ENSSGRP00000028725	LOC107554555	ENSSGRP00000028725	ENSSGRP00000078367	annotation not available	Rhombotin-2-like.	0.885
ENSSGRP00000028725	LOC107567630	ENSSGRP00000028725	ENSSGRP00000066857	annotation not available	LIM domain-binding protein 1-like isoform X1.	0.837
ENSSGRP00000028725	LOC107571884	ENSSGRP00000028725	ENSSGRP00000023743	annotation not available	Runt-related transcription factor 1-like isoform X1.	0.600
ENSSGRP00000028725	LOC107585322	ENSSGRP00000028725	ENSSGRP00000051602	annotation not available	LIM domain-binding protein 1-A isoform X1.	0.817
ENSSGRP00000051536	ENSSGRP00000005880	ENSSGRP00000051536	ENSSGRP00000005880	Core-binding factor subunit beta.	T-cell acute lymphocytic leukemia protein 1 homolog.	0.650
ENSSGRP00000051536	ENSSGRP00000028725	ENSSGRP00000051536	ENSSGRP00000028725	Core-binding factor subunit beta.	annotation not available	0.525