(11 nodes) Mixed, incl. PUL domain, and Ubiquitin fusion degradation protein UFD1 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107561846	Nuclear protein localization protein 4 homolog. (625 aa)
	LOC107552754	Fanconi anemia core complex-associated protein 100-like. (835 aa)
	LOC107552148	Ubiquitin fusion degradation protein 1 homolog. (303 aa)
	LOC107580473	Ubiquitin thioesterase OTU1. (301 aa)
	LOC107553030	Ubiquitin fusion degradation protein 1 homolog. (308 aa)
	LOC107549730	Phospholipase A-2-activating protein-like. (799 aa)
	ENSSGRP00000074659	Phospholipase A2-activating protein. (801 aa)
	LOC107582461	Ubiquitin thioesterase OTU1-like. (301 aa)
	LOC107563300	UBX domain-containing protein 7-like isoform X1. (512 aa)
	spata5l1	Spermatogenesis-associated protein 5-like protein 1 isoform X1. (748 aa)
	ENSSGRP00000103417	annotation not available (730 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000074659	ENSSGRP00000103417	ENSSGRP00000074659	ENSSGRP00000103417	Phospholipase A2-activating protein.	annotation not available	0.885
ENSSGRP00000074659	LOC107552148	ENSSGRP00000074659	ENSSGRP00000024546	Phospholipase A2-activating protein.	Ubiquitin fusion degradation protein 1 homolog.	0.986
ENSSGRP00000074659	LOC107552754	ENSSGRP00000074659	ENSSGRP00000012841	Phospholipase A2-activating protein.	Fanconi anemia core complex-associated protein 100-like.	0.933
ENSSGRP00000074659	LOC107553030	ENSSGRP00000074659	ENSSGRP00000056947	Phospholipase A2-activating protein.	Ubiquitin fusion degradation protein 1 homolog.	0.986
ENSSGRP00000074659	LOC107561846	ENSSGRP00000074659	ENSSGRP00000005839	Phospholipase A2-activating protein.	Nuclear protein localization protein 4 homolog.	0.933
ENSSGRP00000074659	LOC107563300	ENSSGRP00000074659	ENSSGRP00000081021	Phospholipase A2-activating protein.	UBX domain-containing protein 7-like isoform X1.	0.903
ENSSGRP00000074659	LOC107580473	ENSSGRP00000074659	ENSSGRP00000024850	Phospholipase A2-activating protein.	Ubiquitin thioesterase OTU1.	0.985
ENSSGRP00000074659	LOC107582461	ENSSGRP00000074659	ENSSGRP00000078249	Phospholipase A2-activating protein.	Ubiquitin thioesterase OTU1-like.	0.985
ENSSGRP00000074659	spata5l1	ENSSGRP00000074659	ENSSGRP00000098119	Phospholipase A2-activating protein.	Spermatogenesis-associated protein 5-like protein 1 isoform X1.	0.885
ENSSGRP00000103417	ENSSGRP00000074659	ENSSGRP00000103417	ENSSGRP00000074659	annotation not available	Phospholipase A2-activating protein.	0.885
ENSSGRP00000103417	LOC107549730	ENSSGRP00000103417	ENSSGRP00000067451	annotation not available	Phospholipase A-2-activating protein-like.	0.885
ENSSGRP00000103417	LOC107552148	ENSSGRP00000103417	ENSSGRP00000024546	annotation not available	Ubiquitin fusion degradation protein 1 homolog.	0.957
ENSSGRP00000103417	LOC107552754	ENSSGRP00000103417	ENSSGRP00000012841	annotation not available	Fanconi anemia core complex-associated protein 100-like.	0.910
ENSSGRP00000103417	LOC107553030	ENSSGRP00000103417	ENSSGRP00000056947	annotation not available	Ubiquitin fusion degradation protein 1 homolog.	0.957
ENSSGRP00000103417	LOC107561846	ENSSGRP00000103417	ENSSGRP00000005839	annotation not available	Nuclear protein localization protein 4 homolog.	0.910
ENSSGRP00000103417	LOC107563300	ENSSGRP00000103417	ENSSGRP00000081021	annotation not available	UBX domain-containing protein 7-like isoform X1.	0.999
ENSSGRP00000103417	LOC107580473	ENSSGRP00000103417	ENSSGRP00000024850	annotation not available	Ubiquitin thioesterase OTU1.	0.945
ENSSGRP00000103417	LOC107582461	ENSSGRP00000103417	ENSSGRP00000078249	annotation not available	Ubiquitin thioesterase OTU1-like.	0.945
LOC107549730	ENSSGRP00000103417	ENSSGRP00000067451	ENSSGRP00000103417	Phospholipase A-2-activating protein-like.	annotation not available	0.885
LOC107549730	LOC107552148	ENSSGRP00000067451	ENSSGRP00000024546	Phospholipase A-2-activating protein-like.	Ubiquitin fusion degradation protein 1 homolog.	0.986