(6 nodes) TMEM164 family, and Serine-rich and transmembrane domain-containing protein 1 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000004017	Serine-rich and transmembrane domain-containing protein 1-like. (94 aa)
	ENSSGRP00000006023	Transmembrane protein 14C-like. (99 aa)
	LOC107569769	Transmembrane protein 164-like. (313 aa)
	SERTM1	Serine-rich and transmembrane domain-containing protein 1. (109 aa)
	LOC107561967	Transmembrane protein 14C-like. (95 aa)
	TMEM164	Transmembrane protein 164-like isoform X1. (313 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004017	ENSSGRP00000006023	ENSSGRP00000004017	ENSSGRP00000006023	Serine-rich and transmembrane domain-containing protein 1-like.	Transmembrane protein 14C-like.	0.517
ENSSGRP00000004017	LOC107561967	ENSSGRP00000004017	ENSSGRP00000049393	Serine-rich and transmembrane domain-containing protein 1-like.	Transmembrane protein 14C-like.	0.517
ENSSGRP00000004017	LOC107569769	ENSSGRP00000004017	ENSSGRP00000040090	Serine-rich and transmembrane domain-containing protein 1-like.	Transmembrane protein 164-like.	0.621
ENSSGRP00000004017	TMEM164	ENSSGRP00000004017	ENSSGRP00000082593	Serine-rich and transmembrane domain-containing protein 1-like.	Transmembrane protein 164-like isoform X1.	0.621
ENSSGRP00000006023	ENSSGRP00000004017	ENSSGRP00000006023	ENSSGRP00000004017	Transmembrane protein 14C-like.	Serine-rich and transmembrane domain-containing protein 1-like.	0.517
ENSSGRP00000006023	LOC107569769	ENSSGRP00000006023	ENSSGRP00000040090	Transmembrane protein 14C-like.	Transmembrane protein 164-like.	0.516
ENSSGRP00000006023	SERTM1	ENSSGRP00000006023	ENSSGRP00000044681	Transmembrane protein 14C-like.	Serine-rich and transmembrane domain-containing protein 1.	0.517
ENSSGRP00000006023	TMEM164	ENSSGRP00000006023	ENSSGRP00000082593	Transmembrane protein 14C-like.	Transmembrane protein 164-like isoform X1.	0.516
LOC107561967	ENSSGRP00000004017	ENSSGRP00000049393	ENSSGRP00000004017	Transmembrane protein 14C-like.	Serine-rich and transmembrane domain-containing protein 1-like.	0.517
LOC107561967	LOC107569769	ENSSGRP00000049393	ENSSGRP00000040090	Transmembrane protein 14C-like.	Transmembrane protein 164-like.	0.516
LOC107561967	SERTM1	ENSSGRP00000049393	ENSSGRP00000044681	Transmembrane protein 14C-like.	Serine-rich and transmembrane domain-containing protein 1.	0.517
LOC107561967	TMEM164	ENSSGRP00000049393	ENSSGRP00000082593	Transmembrane protein 14C-like.	Transmembrane protein 164-like isoform X1.	0.516
LOC107569769	ENSSGRP00000004017	ENSSGRP00000040090	ENSSGRP00000004017	Transmembrane protein 164-like.	Serine-rich and transmembrane domain-containing protein 1-like.	0.621
LOC107569769	ENSSGRP00000006023	ENSSGRP00000040090	ENSSGRP00000006023	Transmembrane protein 164-like.	Transmembrane protein 14C-like.	0.516
LOC107569769	LOC107561967	ENSSGRP00000040090	ENSSGRP00000049393	Transmembrane protein 164-like.	Transmembrane protein 14C-like.	0.516
LOC107569769	SERTM1	ENSSGRP00000040090	ENSSGRP00000044681	Transmembrane protein 164-like.	Serine-rich and transmembrane domain-containing protein 1.	0.621
SERTM1	ENSSGRP00000006023	ENSSGRP00000044681	ENSSGRP00000006023	Serine-rich and transmembrane domain-containing protein 1.	Transmembrane protein 14C-like.	0.517
SERTM1	LOC107561967	ENSSGRP00000044681	ENSSGRP00000049393	Serine-rich and transmembrane domain-containing protein 1.	Transmembrane protein 14C-like.	0.517
SERTM1	LOC107569769	ENSSGRP00000044681	ENSSGRP00000040090	Serine-rich and transmembrane domain-containing protein 1.	Transmembrane protein 164-like.	0.621
SERTM1	TMEM164	ENSSGRP00000044681	ENSSGRP00000082593	Serine-rich and transmembrane domain-containing protein 1.	Transmembrane protein 164-like isoform X1.	0.621