(18 nodes) Mixed, incl. CARMIL C-terminus, and WTX protein network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000011844	Leucine-rich repeat-containing protein 16B-like. (1165 aa)
	LOC107569011	Transmembrane protein 179-like. (236 aa)
	ENSSGRP00000024572	Uncharacterized protein LOC107553265. (561 aa)
	LOC107600463	Protein CDKN2AIP homolog A-like isoform X1. (313 aa)
	LOC107583724	F-actin-uncapping protein RLTPR-like isoform X1. (1633 aa)
	ENSSGRP00000033550	Protein FAM110C-like. (305 aa)
	ENSSGRP00000039644	Uncharacterized protein LOC107569737. (438 aa)
	LOC107599394	Protein FAM110C-like. (316 aa)
	carmil3	Leucine-rich repeat-containing protein 16B isoform X1. (1376 aa)
	ENSSGRP00000048849	Solute carrier family 35 member F3b. (259 aa)
	LOC107584765	Protein FAM171B-like. (770 aa)
	LOC107590219	APC membrane recruitment protein 2. (654 aa)
	LOC107582469	Coiled-coil domain-containing protein 50-like isoform X1. (346 aa)
	LOC107595744	Transmembrane protein 145-like. (544 aa)
	ENSSGRP00000097894	Family with sequence similarity 221 member A. (206 aa)
	LOC107593664	Transmembrane protein 145-like. (543 aa)
	LOC107596431	Protein CDKN2AIP homolog A-like. (312 aa)
	ENSSGRP00000107644	APC membrane recruitment protein 2-like. (524 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000011844	LOC107593664	ENSSGRP00000011844	ENSSGRP00000100509	Leucine-rich repeat-containing protein 16B-like.	Transmembrane protein 145-like.	0.441
ENSSGRP00000011844	LOC107595744	ENSSGRP00000011844	ENSSGRP00000081362	Leucine-rich repeat-containing protein 16B-like.	Transmembrane protein 145-like.	0.441
ENSSGRP00000024572	ENSSGRP00000107644	ENSSGRP00000024572	ENSSGRP00000107644	Uncharacterized protein LOC107553265.	APC membrane recruitment protein 2-like.	0.627
ENSSGRP00000024572	LOC107569011	ENSSGRP00000024572	ENSSGRP00000015248	Uncharacterized protein LOC107553265.	Transmembrane protein 179-like.	0.450
ENSSGRP00000024572	LOC107590219	ENSSGRP00000024572	ENSSGRP00000068868	Uncharacterized protein LOC107553265.	APC membrane recruitment protein 2.	0.627
ENSSGRP00000039644	ENSSGRP00000107644	ENSSGRP00000039644	ENSSGRP00000107644	Uncharacterized protein LOC107569737.	APC membrane recruitment protein 2-like.	0.627
ENSSGRP00000039644	LOC107569011	ENSSGRP00000039644	ENSSGRP00000015248	Uncharacterized protein LOC107569737.	Transmembrane protein 179-like.	0.450
ENSSGRP00000039644	LOC107590219	ENSSGRP00000039644	ENSSGRP00000068868	Uncharacterized protein LOC107569737.	APC membrane recruitment protein 2.	0.627
ENSSGRP00000107644	ENSSGRP00000024572	ENSSGRP00000107644	ENSSGRP00000024572	APC membrane recruitment protein 2-like.	Uncharacterized protein LOC107553265.	0.627
ENSSGRP00000107644	ENSSGRP00000039644	ENSSGRP00000107644	ENSSGRP00000039644	APC membrane recruitment protein 2-like.	Uncharacterized protein LOC107569737.	0.627
LOC107569011	ENSSGRP00000024572	ENSSGRP00000015248	ENSSGRP00000024572	Transmembrane protein 179-like.	Uncharacterized protein LOC107553265.	0.450
LOC107569011	ENSSGRP00000039644	ENSSGRP00000015248	ENSSGRP00000039644	Transmembrane protein 179-like.	Uncharacterized protein LOC107569737.	0.450
LOC107569011	LOC107584765	ENSSGRP00000015248	ENSSGRP00000050171	Transmembrane protein 179-like.	Protein FAM171B-like.	0.481
LOC107569011	LOC107593664	ENSSGRP00000015248	ENSSGRP00000100509	Transmembrane protein 179-like.	Transmembrane protein 145-like.	0.485
LOC107569011	LOC107595744	ENSSGRP00000015248	ENSSGRP00000081362	Transmembrane protein 179-like.	Transmembrane protein 145-like.	0.485
LOC107583724	LOC107593664	ENSSGRP00000033249	ENSSGRP00000100509	F-actin-uncapping protein RLTPR-like isoform X1.	Transmembrane protein 145-like.	0.441
LOC107583724	LOC107595744	ENSSGRP00000033249	ENSSGRP00000081362	F-actin-uncapping protein RLTPR-like isoform X1.	Transmembrane protein 145-like.	0.441
LOC107584765	LOC107569011	ENSSGRP00000050171	ENSSGRP00000015248	Protein FAM171B-like.	Transmembrane protein 179-like.	0.481
LOC107590219	ENSSGRP00000024572	ENSSGRP00000068868	ENSSGRP00000024572	APC membrane recruitment protein 2.	Uncharacterized protein LOC107553265.	0.627
LOC107590219	ENSSGRP00000039644	ENSSGRP00000068868	ENSSGRP00000039644	APC membrane recruitment protein 2.	Uncharacterized protein LOC107569737.	0.627