(5 nodes) Delta DNA polymerase complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000017974	annotation not available (756 aa)
	ENSSGRP00000020939	Polymerase (DNA directed), delta 2, regulatory subunit. (373 aa)
	ENSSGRP00000034228	Polymerase (DNA-directed), delta 3, accessory subunit. (409 aa)
	LOC107583397	Proliferating cell nuclear antigen. (260 aa)
	ENSSGRP00000073904	annotation not available (101 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000017974	ENSSGRP00000020939	ENSSGRP00000017974	ENSSGRP00000020939	annotation not available	Polymerase (DNA directed), delta 2, regulatory subunit.	0.998
ENSSGRP00000017974	ENSSGRP00000034228	ENSSGRP00000017974	ENSSGRP00000034228	annotation not available	Polymerase (DNA-directed), delta 3, accessory subunit.	0.977
ENSSGRP00000017974	ENSSGRP00000073904	ENSSGRP00000017974	ENSSGRP00000073904	annotation not available	annotation not available	0.975
ENSSGRP00000017974	LOC107583397	ENSSGRP00000017974	ENSSGRP00000056321	annotation not available	Proliferating cell nuclear antigen.	0.984
ENSSGRP00000020939	ENSSGRP00000017974	ENSSGRP00000020939	ENSSGRP00000017974	Polymerase (DNA directed), delta 2, regulatory subunit.	annotation not available	0.998
ENSSGRP00000020939	ENSSGRP00000034228	ENSSGRP00000020939	ENSSGRP00000034228	Polymerase (DNA directed), delta 2, regulatory subunit.	Polymerase (DNA-directed), delta 3, accessory subunit.	0.999
ENSSGRP00000020939	ENSSGRP00000073904	ENSSGRP00000020939	ENSSGRP00000073904	Polymerase (DNA directed), delta 2, regulatory subunit.	annotation not available	0.997
ENSSGRP00000020939	LOC107583397	ENSSGRP00000020939	ENSSGRP00000056321	Polymerase (DNA directed), delta 2, regulatory subunit.	Proliferating cell nuclear antigen.	0.999
ENSSGRP00000034228	ENSSGRP00000017974	ENSSGRP00000034228	ENSSGRP00000017974	Polymerase (DNA-directed), delta 3, accessory subunit.	annotation not available	0.977
ENSSGRP00000034228	ENSSGRP00000020939	ENSSGRP00000034228	ENSSGRP00000020939	Polymerase (DNA-directed), delta 3, accessory subunit.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.999
ENSSGRP00000034228	ENSSGRP00000073904	ENSSGRP00000034228	ENSSGRP00000073904	Polymerase (DNA-directed), delta 3, accessory subunit.	annotation not available	0.982
ENSSGRP00000034228	LOC107583397	ENSSGRP00000034228	ENSSGRP00000056321	Polymerase (DNA-directed), delta 3, accessory subunit.	Proliferating cell nuclear antigen.	0.990
ENSSGRP00000073904	ENSSGRP00000017974	ENSSGRP00000073904	ENSSGRP00000017974	annotation not available	annotation not available	0.975
ENSSGRP00000073904	ENSSGRP00000020939	ENSSGRP00000073904	ENSSGRP00000020939	annotation not available	Polymerase (DNA directed), delta 2, regulatory subunit.	0.997
ENSSGRP00000073904	ENSSGRP00000034228	ENSSGRP00000073904	ENSSGRP00000034228	annotation not available	Polymerase (DNA-directed), delta 3, accessory subunit.	0.982
ENSSGRP00000073904	LOC107583397	ENSSGRP00000073904	ENSSGRP00000056321	annotation not available	Proliferating cell nuclear antigen.	0.970
LOC107583397	ENSSGRP00000017974	ENSSGRP00000056321	ENSSGRP00000017974	Proliferating cell nuclear antigen.	annotation not available	0.984
LOC107583397	ENSSGRP00000020939	ENSSGRP00000056321	ENSSGRP00000020939	Proliferating cell nuclear antigen.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.999
LOC107583397	ENSSGRP00000034228	ENSSGRP00000056321	ENSSGRP00000034228	Proliferating cell nuclear antigen.	Polymerase (DNA-directed), delta 3, accessory subunit.	0.990
LOC107583397	ENSSGRP00000073904	ENSSGRP00000056321	ENSSGRP00000073904	Proliferating cell nuclear antigen.	annotation not available	0.970