(22 nodes) APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement Pathway, and Double-stranded DNA 3-5 exodeoxyribonuclease activity network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000000328	Probable endonuclease 4. (296 aa)
	ENSSGRP00000000375	Si:ch211-141o9.10. (230 aa)
	ogg1	N-glycosylase/DNA lyase. (396 aa)
	LOC107561379	Bifunctional polynucleotide phosphatase/kinase-like. (589 aa)
	LOC107550000	DNA-(apurinic or apyrimidinic site) lyase 2-like. (563 aa)
	LOC107598837	Endonuclease 8-like 1 isoform X1. (446 aa)
	ENSSGRP00000039473	DNA repair protein XRCC1-like. (107 aa)
	LOC107569743	Probable flap endonuclease 1 homolog. (350 aa)
	ENSSGRP00000041210	Aprataxin. (345 aa)
	ENSSGRP00000049789	annotation not available (141 aa)
	LOC107549375	DNA-(apurinic or apyrimidinic site) lyase 2-like. (563 aa)
	LOC107579619	DNA-(apurinic or apyrimidinic site) lyase-like. (327 aa)
	ENSSGRP00000065739	Uracil DNA glycosylase a. (268 aa)
	ENSSGRP00000072326	Si:ch211-141o9.10. (241 aa)
	ENSSGRP00000078381	LOW QUALITY PROTEIN: DNA ligase 3-like. (962 aa)
	ENSSGRP00000083556	Nth-like DNA glycosylase 1. (251 aa)
	ENSSGRP00000084331	DNA polymerase beta-like. (54 aa)
	ENSSGRP00000086647	annotation not available (107 aa)
	LOC107583973	DNA-(apurinic or apyrimidinic site) lyase isoform X1. (341 aa)
	ENSSGRP00000090583	LOW QUALITY PROTEIN: DNA ligase 1-like. (977 aa)
	polb	DNA polymerase beta isoform X1. (339 aa)
	Dntt	DNA nucleotidylexotransferase. (485 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dntt	ENSSGRP00000039473	ENSSGRP00000104297	ENSSGRP00000039473	DNA nucleotidylexotransferase.	DNA repair protein XRCC1-like.	0.931
Dntt	ENSSGRP00000078381	ENSSGRP00000104297	ENSSGRP00000078381	DNA nucleotidylexotransferase.	LOW QUALITY PROTEIN: DNA ligase 3-like.	0.693
Dntt	ENSSGRP00000083556	ENSSGRP00000104297	ENSSGRP00000083556	DNA nucleotidylexotransferase.	Nth-like DNA glycosylase 1.	0.538
Dntt	ENSSGRP00000084331	ENSSGRP00000104297	ENSSGRP00000084331	DNA nucleotidylexotransferase.	DNA polymerase beta-like.	0.515
Dntt	ENSSGRP00000086647	ENSSGRP00000104297	ENSSGRP00000086647	DNA nucleotidylexotransferase.	annotation not available	0.622
Dntt	ENSSGRP00000090583	ENSSGRP00000104297	ENSSGRP00000090583	DNA nucleotidylexotransferase.	LOW QUALITY PROTEIN: DNA ligase 1-like.	0.787
Dntt	LOC107549375	ENSSGRP00000104297	ENSSGRP00000052155	DNA nucleotidylexotransferase.	DNA-(apurinic or apyrimidinic site) lyase 2-like.	0.542
Dntt	LOC107550000	ENSSGRP00000104297	ENSSGRP00000029280	DNA nucleotidylexotransferase.	DNA-(apurinic or apyrimidinic site) lyase 2-like.	0.542
Dntt	LOC107561379	ENSSGRP00000104297	ENSSGRP00000029096	DNA nucleotidylexotransferase.	Bifunctional polynucleotide phosphatase/kinase-like.	0.755
Dntt	LOC107569743	ENSSGRP00000104297	ENSSGRP00000039661	DNA nucleotidylexotransferase.	Probable flap endonuclease 1 homolog.	0.634
Dntt	LOC107579619	ENSSGRP00000104297	ENSSGRP00000056340	DNA nucleotidylexotransferase.	DNA-(apurinic or apyrimidinic site) lyase-like.	0.542
Dntt	LOC107583973	ENSSGRP00000104297	ENSSGRP00000088496	DNA nucleotidylexotransferase.	DNA-(apurinic or apyrimidinic site) lyase isoform X1.	0.542
Dntt	LOC107598837	ENSSGRP00000104297	ENSSGRP00000036722	DNA nucleotidylexotransferase.	Endonuclease 8-like 1 isoform X1.	0.622
Dntt	polb	ENSSGRP00000104297	ENSSGRP00000101627	DNA nucleotidylexotransferase.	DNA polymerase beta isoform X1.	0.543
ENSSGRP00000000328	ENSSGRP00000049789	ENSSGRP00000000328	ENSSGRP00000049789	Probable endonuclease 4.	annotation not available	0.733
ENSSGRP00000000328	ENSSGRP00000065739	ENSSGRP00000000328	ENSSGRP00000065739	Probable endonuclease 4.	Uracil DNA glycosylase a.	0.645
ENSSGRP00000000328	ENSSGRP00000078381	ENSSGRP00000000328	ENSSGRP00000078381	Probable endonuclease 4.	LOW QUALITY PROTEIN: DNA ligase 3-like.	0.475
ENSSGRP00000000328	ENSSGRP00000083556	ENSSGRP00000000328	ENSSGRP00000083556	Probable endonuclease 4.	Nth-like DNA glycosylase 1.	0.910
ENSSGRP00000000328	ENSSGRP00000090583	ENSSGRP00000000328	ENSSGRP00000090583	Probable endonuclease 4.	LOW QUALITY PROTEIN: DNA ligase 1-like.	0.646
ENSSGRP00000000328	LOC107549375	ENSSGRP00000000328	ENSSGRP00000052155	Probable endonuclease 4.	DNA-(apurinic or apyrimidinic site) lyase 2-like.	0.983