(12 nodes) Mixed, incl. Cul5-RING ubiquitin ligase complex, and Lung seven transmembrane receptor network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107549979	Super conserved receptor expressed in brain 3. (387 aa)
	ENSSGRP00000026982	G protein-coupled receptor 107. (504 aa)
	LOC107583468	Ankyrin repeat domain-containing protein 9-like. (287 aa)
	LOC107565765	Probable G-protein coupled receptor 146 isoform X1. (355 aa)
	ENSSGRP00000038058	G-protein coupled receptor 54. (367 aa)
	LOC107563168	Neuropeptide Y receptor type 1-like. (377 aa)
	LOC107549585	Super conserved receptor expressed in brain 3. (387 aa)
	LOC107559038	G-protein coupled receptor 54-like. (366 aa)
	smim20	Small integral membrane protein 20. (67 aa)
	LOC107590959	Ankyrin repeat domain-containing protein 9-like. (287 aa)
	LOC107550312	Probable G-protein coupled receptor 146. (333 aa)
	GPR139	Probable G-protein coupled receptor 139. (370 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000026982	LOC107550312	ENSSGRP00000026982	ENSSGRP00000080102	G protein-coupled receptor 107.	Probable G-protein coupled receptor 146.	0.489
ENSSGRP00000026982	LOC107565765	ENSSGRP00000026982	ENSSGRP00000037014	G protein-coupled receptor 107.	Probable G-protein coupled receptor 146 isoform X1.	0.489
ENSSGRP00000038058	LOC107549585	ENSSGRP00000038058	ENSSGRP00000060951	G-protein coupled receptor 54.	Super conserved receptor expressed in brain 3.	0.678
ENSSGRP00000038058	LOC107549979	ENSSGRP00000038058	ENSSGRP00000015946	G-protein coupled receptor 54.	Super conserved receptor expressed in brain 3.	0.678
ENSSGRP00000038058	LOC107559038	ENSSGRP00000038058	ENSSGRP00000061186	G-protein coupled receptor 54.	G-protein coupled receptor 54-like.	0.900
ENSSGRP00000038058	LOC107583468	ENSSGRP00000038058	ENSSGRP00000028141	G-protein coupled receptor 54.	Ankyrin repeat domain-containing protein 9-like.	0.683
ENSSGRP00000038058	LOC107590959	ENSSGRP00000038058	ENSSGRP00000076462	G-protein coupled receptor 54.	Ankyrin repeat domain-containing protein 9-like.	0.683
ENSSGRP00000038058	smim20	ENSSGRP00000038058	ENSSGRP00000074331	G-protein coupled receptor 54.	Small integral membrane protein 20.	0.714
GPR139	LOC107550312	ENSSGRP00000090625	ENSSGRP00000080102	Probable G-protein coupled receptor 139.	Probable G-protein coupled receptor 146.	0.497
GPR139	LOC107565765	ENSSGRP00000090625	ENSSGRP00000037014	Probable G-protein coupled receptor 139.	Probable G-protein coupled receptor 146 isoform X1.	0.497
LOC107549585	ENSSGRP00000038058	ENSSGRP00000060951	ENSSGRP00000038058	Super conserved receptor expressed in brain 3.	G-protein coupled receptor 54.	0.678
LOC107549585	LOC107550312	ENSSGRP00000060951	ENSSGRP00000080102	Super conserved receptor expressed in brain 3.	Probable G-protein coupled receptor 146.	0.412
LOC107549585	LOC107559038	ENSSGRP00000060951	ENSSGRP00000061186	Super conserved receptor expressed in brain 3.	G-protein coupled receptor 54-like.	0.678
LOC107549585	LOC107563168	ENSSGRP00000060951	ENSSGRP00000057800	Super conserved receptor expressed in brain 3.	Neuropeptide Y receptor type 1-like.	0.649
LOC107549585	LOC107565765	ENSSGRP00000060951	ENSSGRP00000037014	Super conserved receptor expressed in brain 3.	Probable G-protein coupled receptor 146 isoform X1.	0.412
LOC107549585	LOC107583468	ENSSGRP00000060951	ENSSGRP00000028141	Super conserved receptor expressed in brain 3.	Ankyrin repeat domain-containing protein 9-like.	0.641
LOC107549585	LOC107590959	ENSSGRP00000060951	ENSSGRP00000076462	Super conserved receptor expressed in brain 3.	Ankyrin repeat domain-containing protein 9-like.	0.641
LOC107549585	smim20	ENSSGRP00000060951	ENSSGRP00000074331	Super conserved receptor expressed in brain 3.	Small integral membrane protein 20.	0.899
LOC107549979	ENSSGRP00000038058	ENSSGRP00000015946	ENSSGRP00000038058	Super conserved receptor expressed in brain 3.	G-protein coupled receptor 54.	0.678
LOC107549979	LOC107550312	ENSSGRP00000015946	ENSSGRP00000080102	Super conserved receptor expressed in brain 3.	Probable G-protein coupled receptor 146.	0.412