(37 nodes) Zinc ion transport network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107561269	Solute carrier family 39 (zinc transporter), member 14. (494 aa)
	ENSSGRP00000002490	annotation not available (157 aa)
	LOC107592711	Solute carrier family 30 (zinc transporter), member 5/7. (379 aa)
	LOC107595996	Solute carrier family 30 (zinc transporter), member 5/7. (775 aa)
	ENSSGRP00000004874	Zinc transporter ZIP10-like. (158 aa)
	SLC39A7	Solute carrier family 39 member 7. (423 aa)
	SLC39A11	Solute carrier family 39 (zinc transporter), member 11. (271 aa)
	ENSSGRP00000015276	annotation not available (96 aa)
	ENSSGRP00000016462	annotation not available (310 aa)
	ENSSGRP00000028834	annotation not available (217 aa)
	slc39a11	Solute carrier family 39 (zinc transporter), member 11. (342 aa)
	ENSSGRP00000037187	annotation not available (128 aa)
	LOC107566949	Solute carrier family 39 (zinc transporter), member 7. (465 aa)
	ENSSGRP00000044174	annotation not available (216 aa)
	ENSSGRP00000044179	annotation not available (191 aa)
	LOC107600588	Solute carrier family 30 (zinc transporter), member 5/7. (777 aa)
	ENSSGRP00000050970	Solute carrier family 39 (zinc transporter), member 4. (141 aa)
	LOC107602639	Solute carrier family 39 (zinc transporter), member 6. (748 aa)
	LOC107560970	Solute carrier family 39 (zinc transporter), member 14. (489 aa)
	LOC107601641	Solute carrier family 30 (zinc transporter), member 10. (357 aa)
	Slc39a13	Solute carrier family 39 (zinc transporter), member 13. (428 aa)
	slc30a6	Solute carrier family 30 member 6. (591 aa)
	LOC107585471	Solute carrier family 39 (zinc transporter), member 9. (253 aa)
	LOC107594702	Solute carrier family 30 (zinc transporter), member 1. (472 aa)
	ENSSGRP00000068313	Solute carrier family 39 (zinc transporter), member 13. (218 aa)
	LOC107587097	Solute carrier family 39 (zinc transporter), member 8. (411 aa)
	LOC107588064	Solute carrier family 30 (zinc transporter), member 5/7. (383 aa)
	ENSSGRP00000075731	Solute carrier family 39 (zinc transporter), member 9. (87 aa)
	ENSSGRP00000077370	Solute carrier family 39 (zinc transporter), member 9. (291 aa)
	LOC107600719	Solute carrier family 39 (zinc transporter), member 1/2/3. (304 aa)
	ENSSGRP00000084802	Solute carrier family 30 member 6. (516 aa)
	ENSSGRP00000089683	annotation not available (101 aa)
	ENSSGRP00000090300	Solute carrier family 30 member 8. (657 aa)
	LOC107598103	Solute carrier family 30 (zinc transporter), member 2. (353 aa)
	slc30a4	Solute carrier family 30 (zinc transporter), member 4. (426 aa)
	LOC107602182	Solute carrier family 30 (zinc transporter), member 2. (353 aa)
	ENSSGRP00000112752	annotation not available (271 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002490	ENSSGRP00000015276	ENSSGRP00000002490	ENSSGRP00000015276	annotation not available	annotation not available	0.454
ENSSGRP00000002490	ENSSGRP00000016462	ENSSGRP00000002490	ENSSGRP00000016462	annotation not available	annotation not available	0.462
ENSSGRP00000002490	ENSSGRP00000037187	ENSSGRP00000002490	ENSSGRP00000037187	annotation not available	annotation not available	0.433
ENSSGRP00000002490	ENSSGRP00000075731	ENSSGRP00000002490	ENSSGRP00000075731	annotation not available	Solute carrier family 39 (zinc transporter), member 9.	0.569
ENSSGRP00000002490	ENSSGRP00000077370	ENSSGRP00000002490	ENSSGRP00000077370	annotation not available	Solute carrier family 39 (zinc transporter), member 9.	0.569
ENSSGRP00000002490	ENSSGRP00000084802	ENSSGRP00000002490	ENSSGRP00000084802	annotation not available	Solute carrier family 30 member 6.	0.562
ENSSGRP00000002490	ENSSGRP00000089683	ENSSGRP00000002490	ENSSGRP00000089683	annotation not available	annotation not available	0.433
ENSSGRP00000002490	ENSSGRP00000112752	ENSSGRP00000002490	ENSSGRP00000112752	annotation not available	annotation not available	0.660
ENSSGRP00000002490	LOC107585471	ENSSGRP00000002490	ENSSGRP00000066513	annotation not available	Solute carrier family 39 (zinc transporter), member 9.	0.462
ENSSGRP00000002490	LOC107588064	ENSSGRP00000002490	ENSSGRP00000074383	annotation not available	Solute carrier family 30 (zinc transporter), member 5/7.	0.547
ENSSGRP00000002490	LOC107592711	ENSSGRP00000002490	ENSSGRP00000002506	annotation not available	Solute carrier family 30 (zinc transporter), member 5/7.	0.547
ENSSGRP00000002490	LOC107595996	ENSSGRP00000002490	ENSSGRP00000003770	annotation not available	Solute carrier family 30 (zinc transporter), member 5/7.	0.556
ENSSGRP00000002490	LOC107598103	ENSSGRP00000002490	ENSSGRP00000093800	annotation not available	Solute carrier family 30 (zinc transporter), member 2.	0.480
ENSSGRP00000002490	LOC107600588	ENSSGRP00000002490	ENSSGRP00000049764	annotation not available	Solute carrier family 30 (zinc transporter), member 5/7.	0.556
ENSSGRP00000002490	LOC107600719	ENSSGRP00000002490	ENSSGRP00000079970	annotation not available	Solute carrier family 39 (zinc transporter), member 1/2/3.	0.482
ENSSGRP00000002490	LOC107601641	ENSSGRP00000002490	ENSSGRP00000056600	annotation not available	Solute carrier family 30 (zinc transporter), member 10.	0.504
ENSSGRP00000002490	LOC107602182	ENSSGRP00000002490	ENSSGRP00000099103	annotation not available	Solute carrier family 30 (zinc transporter), member 2.	0.480
ENSSGRP00000002490	SLC39A11	ENSSGRP00000002490	ENSSGRP00000015273	annotation not available	Solute carrier family 39 (zinc transporter), member 11.	0.454
ENSSGRP00000002490	slc30a4	ENSSGRP00000002490	ENSSGRP00000098122	annotation not available	Solute carrier family 30 (zinc transporter), member 4.	0.714
ENSSGRP00000002490	slc30a6	ENSSGRP00000002490	ENSSGRP00000062263	annotation not available	Solute carrier family 30 member 6.	0.562