(5 nodes) Ndc80 complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107576939	Kinetochore protein Spc24, animal type. (111 aa)
	ENSSGRP00000007769	Kinetochore protein Spc25, animal type. (195 aa)
	LOC107569179	Kinetochore protein NDC80 homolog. (632 aa)
	ENSSGRP00000080343	UF2 component of NDC80 kinetochore complex. (432 aa)
	LOC107585046	Uncharacterized protein LOC107585046. (378 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000007769	ENSSGRP00000080343	ENSSGRP00000007769	ENSSGRP00000080343	Kinetochore protein Spc25, animal type.	UF2 component of NDC80 kinetochore complex.	0.999
ENSSGRP00000007769	LOC107569179	ENSSGRP00000007769	ENSSGRP00000046684	Kinetochore protein Spc25, animal type.	Kinetochore protein NDC80 homolog.	0.999
ENSSGRP00000007769	LOC107576939	ENSSGRP00000007769	ENSSGRP00000002460	Kinetochore protein Spc25, animal type.	Kinetochore protein Spc24, animal type.	0.986
ENSSGRP00000007769	LOC107585046	ENSSGRP00000007769	ENSSGRP00000094782	Kinetochore protein Spc25, animal type.	Uncharacterized protein LOC107585046.	0.953
ENSSGRP00000080343	ENSSGRP00000007769	ENSSGRP00000080343	ENSSGRP00000007769	UF2 component of NDC80 kinetochore complex.	Kinetochore protein Spc25, animal type.	0.999
ENSSGRP00000080343	LOC107569179	ENSSGRP00000080343	ENSSGRP00000046684	UF2 component of NDC80 kinetochore complex.	Kinetochore protein NDC80 homolog.	0.999
ENSSGRP00000080343	LOC107576939	ENSSGRP00000080343	ENSSGRP00000002460	UF2 component of NDC80 kinetochore complex.	Kinetochore protein Spc24, animal type.	0.974
ENSSGRP00000080343	LOC107585046	ENSSGRP00000080343	ENSSGRP00000094782	UF2 component of NDC80 kinetochore complex.	Uncharacterized protein LOC107585046.	0.962
LOC107569179	ENSSGRP00000007769	ENSSGRP00000046684	ENSSGRP00000007769	Kinetochore protein NDC80 homolog.	Kinetochore protein Spc25, animal type.	0.999
LOC107569179	ENSSGRP00000080343	ENSSGRP00000046684	ENSSGRP00000080343	Kinetochore protein NDC80 homolog.	UF2 component of NDC80 kinetochore complex.	0.999
LOC107569179	LOC107576939	ENSSGRP00000046684	ENSSGRP00000002460	Kinetochore protein NDC80 homolog.	Kinetochore protein Spc24, animal type.	0.979
LOC107569179	LOC107585046	ENSSGRP00000046684	ENSSGRP00000094782	Kinetochore protein NDC80 homolog.	Uncharacterized protein LOC107585046.	0.956
LOC107576939	ENSSGRP00000007769	ENSSGRP00000002460	ENSSGRP00000007769	Kinetochore protein Spc24, animal type.	Kinetochore protein Spc25, animal type.	0.986
LOC107576939	ENSSGRP00000080343	ENSSGRP00000002460	ENSSGRP00000080343	Kinetochore protein Spc24, animal type.	UF2 component of NDC80 kinetochore complex.	0.974
LOC107576939	LOC107569179	ENSSGRP00000002460	ENSSGRP00000046684	Kinetochore protein Spc24, animal type.	Kinetochore protein NDC80 homolog.	0.979
LOC107576939	LOC107585046	ENSSGRP00000002460	ENSSGRP00000094782	Kinetochore protein Spc24, animal type.	Uncharacterized protein LOC107585046.	0.919
LOC107585046	ENSSGRP00000007769	ENSSGRP00000094782	ENSSGRP00000007769	Uncharacterized protein LOC107585046.	Kinetochore protein Spc25, animal type.	0.953
LOC107585046	ENSSGRP00000080343	ENSSGRP00000094782	ENSSGRP00000080343	Uncharacterized protein LOC107585046.	UF2 component of NDC80 kinetochore complex.	0.962
LOC107585046	LOC107569179	ENSSGRP00000094782	ENSSGRP00000046684	Uncharacterized protein LOC107585046.	Kinetochore protein NDC80 homolog.	0.956
LOC107585046	LOC107576939	ENSSGRP00000094782	ENSSGRP00000002460	Uncharacterized protein LOC107585046.	Kinetochore protein Spc24, animal type.	0.919