(5 nodes) Popeye protein conserved region, and Maintenance of Golgi location network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107598171	TBCC domain-containing protein 1-like. (590 aa)
	ENSSGRP00000058486	annotation not available (185 aa)
	LOC107551749	Popeye domain-containing protein 3-like. (298 aa)
	ENSSGRP00000101277	Popeye domain containing 2. (313 aa)
	LOC107551957	TBCC domain-containing protein 1. (593 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000058486	ENSSGRP00000101277	ENSSGRP00000058486	ENSSGRP00000101277	annotation not available	Popeye domain containing 2.	0.493
ENSSGRP00000058486	LOC107551749	ENSSGRP00000058486	ENSSGRP00000088303	annotation not available	Popeye domain-containing protein 3-like.	0.493
ENSSGRP00000058486	LOC107551957	ENSSGRP00000058486	ENSSGRP00000112488	annotation not available	TBCC domain-containing protein 1.	0.617
ENSSGRP00000058486	LOC107598171	ENSSGRP00000058486	ENSSGRP00000012227	annotation not available	TBCC domain-containing protein 1-like.	0.617
ENSSGRP00000101277	ENSSGRP00000058486	ENSSGRP00000101277	ENSSGRP00000058486	Popeye domain containing 2.	annotation not available	0.493
ENSSGRP00000101277	LOC107551957	ENSSGRP00000101277	ENSSGRP00000112488	Popeye domain containing 2.	TBCC domain-containing protein 1.	0.524
ENSSGRP00000101277	LOC107598171	ENSSGRP00000101277	ENSSGRP00000012227	Popeye domain containing 2.	TBCC domain-containing protein 1-like.	0.524
LOC107551749	ENSSGRP00000058486	ENSSGRP00000088303	ENSSGRP00000058486	Popeye domain-containing protein 3-like.	annotation not available	0.493
LOC107551749	LOC107551957	ENSSGRP00000088303	ENSSGRP00000112488	Popeye domain-containing protein 3-like.	TBCC domain-containing protein 1.	0.524
LOC107551749	LOC107598171	ENSSGRP00000088303	ENSSGRP00000012227	Popeye domain-containing protein 3-like.	TBCC domain-containing protein 1-like.	0.524
LOC107551957	ENSSGRP00000058486	ENSSGRP00000112488	ENSSGRP00000058486	TBCC domain-containing protein 1.	annotation not available	0.617
LOC107551957	ENSSGRP00000101277	ENSSGRP00000112488	ENSSGRP00000101277	TBCC domain-containing protein 1.	Popeye domain containing 2.	0.524
LOC107551957	LOC107551749	ENSSGRP00000112488	ENSSGRP00000088303	TBCC domain-containing protein 1.	Popeye domain-containing protein 3-like.	0.524
LOC107598171	ENSSGRP00000058486	ENSSGRP00000012227	ENSSGRP00000058486	TBCC domain-containing protein 1-like.	annotation not available	0.617
LOC107598171	ENSSGRP00000101277	ENSSGRP00000012227	ENSSGRP00000101277	TBCC domain-containing protein 1-like.	Popeye domain containing 2.	0.524
LOC107598171	LOC107551749	ENSSGRP00000012227	ENSSGRP00000088303	TBCC domain-containing protein 1-like.	Popeye domain-containing protein 3-like.	0.524