(5 nodes) Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity, and N-terminal region of glycosyl transferase group 7 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107593408	Beta-1,4-galactosyltransferase 3-like isoform X1. (412 aa)
	ENSSGRP00000052215	Beta-1,4-galactosyltransferase 3-like. (409 aa)
	LOC107560698	Beta-1,3-galactosyltransferase 2-like. (437 aa)
	LOC107585678	Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842. (379 aa)
	LOC107563744	Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A. (383 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000052215	LOC107560698	ENSSGRP00000052215	ENSSGRP00000073966	Beta-1,4-galactosyltransferase 3-like.	Beta-1,3-galactosyltransferase 2-like.	0.687
ENSSGRP00000052215	LOC107563744	ENSSGRP00000052215	ENSSGRP00000103647	Beta-1,4-galactosyltransferase 3-like.	Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A.	0.915
ENSSGRP00000052215	LOC107585678	ENSSGRP00000052215	ENSSGRP00000091413	Beta-1,4-galactosyltransferase 3-like.	Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842.	0.916
ENSSGRP00000052215	LOC107593408	ENSSGRP00000052215	ENSSGRP00000032947	Beta-1,4-galactosyltransferase 3-like.	Beta-1,4-galactosyltransferase 3-like isoform X1.	0.900
LOC107560698	ENSSGRP00000052215	ENSSGRP00000073966	ENSSGRP00000052215	Beta-1,3-galactosyltransferase 2-like.	Beta-1,4-galactosyltransferase 3-like.	0.687
LOC107560698	LOC107563744	ENSSGRP00000073966	ENSSGRP00000103647	Beta-1,3-galactosyltransferase 2-like.	Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A.	0.650
LOC107560698	LOC107585678	ENSSGRP00000073966	ENSSGRP00000091413	Beta-1,3-galactosyltransferase 2-like.	Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842.	0.660
LOC107560698	LOC107593408	ENSSGRP00000073966	ENSSGRP00000032947	Beta-1,3-galactosyltransferase 2-like.	Beta-1,4-galactosyltransferase 3-like isoform X1.	0.687
LOC107563744	ENSSGRP00000052215	ENSSGRP00000103647	ENSSGRP00000052215	Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A.	Beta-1,4-galactosyltransferase 3-like.	0.915
LOC107563744	LOC107560698	ENSSGRP00000103647	ENSSGRP00000073966	Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A.	Beta-1,3-galactosyltransferase 2-like.	0.650
LOC107563744	LOC107593408	ENSSGRP00000103647	ENSSGRP00000032947	Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A.	Beta-1,4-galactosyltransferase 3-like isoform X1.	0.915
LOC107585678	ENSSGRP00000052215	ENSSGRP00000091413	ENSSGRP00000052215	Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842.	Beta-1,4-galactosyltransferase 3-like.	0.916
LOC107585678	LOC107560698	ENSSGRP00000091413	ENSSGRP00000073966	Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842.	Beta-1,3-galactosyltransferase 2-like.	0.660
LOC107585678	LOC107593408	ENSSGRP00000091413	ENSSGRP00000032947	Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842.	Beta-1,4-galactosyltransferase 3-like isoform X1.	0.916
LOC107593408	ENSSGRP00000052215	ENSSGRP00000032947	ENSSGRP00000052215	Beta-1,4-galactosyltransferase 3-like isoform X1.	Beta-1,4-galactosyltransferase 3-like.	0.900
LOC107593408	LOC107560698	ENSSGRP00000032947	ENSSGRP00000073966	Beta-1,4-galactosyltransferase 3-like isoform X1.	Beta-1,3-galactosyltransferase 2-like.	0.687
LOC107593408	LOC107563744	ENSSGRP00000032947	ENSSGRP00000103647	Beta-1,4-galactosyltransferase 3-like isoform X1.	Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A.	0.915
LOC107593408	LOC107585678	ENSSGRP00000032947	ENSSGRP00000091413	Beta-1,4-galactosyltransferase 3-like isoform X1.	Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842.	0.916