(5 nodes) Mixed, incl. DRM complex, and LIN37 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107585799	Protein lin-37 homolog. (236 aa)
	LOC107584269	Histone-binding protein RBBP4. (457 aa)
	LOC107561548	Protein lin-52 homolog. (138 aa)
	lin9	Protein lin-9 homolog. (543 aa)
	ENSSGRP00000066257	Uncharacterized protein LOC107581819. (324 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000066257	LOC107561548	ENSSGRP00000066257	ENSSGRP00000053322	Uncharacterized protein LOC107581819.	Protein lin-52 homolog.	0.995
ENSSGRP00000066257	LOC107584269	ENSSGRP00000066257	ENSSGRP00000032581	Uncharacterized protein LOC107581819.	Histone-binding protein RBBP4.	0.991
ENSSGRP00000066257	LOC107585799	ENSSGRP00000066257	ENSSGRP00000001795	Uncharacterized protein LOC107581819.	Protein lin-37 homolog.	0.995
ENSSGRP00000066257	lin9	ENSSGRP00000066257	ENSSGRP00000059374	Uncharacterized protein LOC107581819.	Protein lin-9 homolog.	0.996
LOC107561548	ENSSGRP00000066257	ENSSGRP00000053322	ENSSGRP00000066257	Protein lin-52 homolog.	Uncharacterized protein LOC107581819.	0.995
LOC107561548	LOC107584269	ENSSGRP00000053322	ENSSGRP00000032581	Protein lin-52 homolog.	Histone-binding protein RBBP4.	0.990
LOC107561548	LOC107585799	ENSSGRP00000053322	ENSSGRP00000001795	Protein lin-52 homolog.	Protein lin-37 homolog.	0.998
LOC107561548	lin9	ENSSGRP00000053322	ENSSGRP00000059374	Protein lin-52 homolog.	Protein lin-9 homolog.	0.999
LOC107584269	ENSSGRP00000066257	ENSSGRP00000032581	ENSSGRP00000066257	Histone-binding protein RBBP4.	Uncharacterized protein LOC107581819.	0.991
LOC107584269	LOC107561548	ENSSGRP00000032581	ENSSGRP00000053322	Histone-binding protein RBBP4.	Protein lin-52 homolog.	0.990
LOC107584269	LOC107585799	ENSSGRP00000032581	ENSSGRP00000001795	Histone-binding protein RBBP4.	Protein lin-37 homolog.	0.995
LOC107584269	lin9	ENSSGRP00000032581	ENSSGRP00000059374	Histone-binding protein RBBP4.	Protein lin-9 homolog.	0.995
LOC107585799	ENSSGRP00000066257	ENSSGRP00000001795	ENSSGRP00000066257	Protein lin-37 homolog.	Uncharacterized protein LOC107581819.	0.995
LOC107585799	LOC107561548	ENSSGRP00000001795	ENSSGRP00000053322	Protein lin-37 homolog.	Protein lin-52 homolog.	0.998
LOC107585799	LOC107584269	ENSSGRP00000001795	ENSSGRP00000032581	Protein lin-37 homolog.	Histone-binding protein RBBP4.	0.995
LOC107585799	lin9	ENSSGRP00000001795	ENSSGRP00000059374	Protein lin-37 homolog.	Protein lin-9 homolog.	0.998
lin9	ENSSGRP00000066257	ENSSGRP00000059374	ENSSGRP00000066257	Protein lin-9 homolog.	Uncharacterized protein LOC107581819.	0.996
lin9	LOC107561548	ENSSGRP00000059374	ENSSGRP00000053322	Protein lin-9 homolog.	Protein lin-52 homolog.	0.999
lin9	LOC107584269	ENSSGRP00000059374	ENSSGRP00000032581	Protein lin-9 homolog.	Histone-binding protein RBBP4.	0.995
lin9	LOC107585799	ENSSGRP00000059374	ENSSGRP00000001795	Protein lin-9 homolog.	Protein lin-37 homolog.	0.998