(5 nodes) USP8 interacting, and USP8 dimerisation domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000008676	annotation not available (651 aa)
	rnf41	E3 ubiquitin-protein ligase NRDP1. (317 aa)
	LOC107594019	E3 ubiquitin-protein ligase NRDP1-like. (201 aa)
	ENSSGRP00000054308	Ubiquitin specific peptidase 8. (943 aa)
	usp2	Ubiquitin carboxyl-terminal hydrolase 2. (416 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000008676	LOC107594019	ENSSGRP00000008676	ENSSGRP00000044911	annotation not available	E3 ubiquitin-protein ligase NRDP1-like.	0.866
ENSSGRP00000008676	rnf41	ENSSGRP00000008676	ENSSGRP00000043749	annotation not available	E3 ubiquitin-protein ligase NRDP1.	0.866
ENSSGRP00000054308	LOC107594019	ENSSGRP00000054308	ENSSGRP00000044911	Ubiquitin specific peptidase 8.	E3 ubiquitin-protein ligase NRDP1-like.	0.997
ENSSGRP00000054308	rnf41	ENSSGRP00000054308	ENSSGRP00000043749	Ubiquitin specific peptidase 8.	E3 ubiquitin-protein ligase NRDP1.	0.997
LOC107594019	ENSSGRP00000008676	ENSSGRP00000044911	ENSSGRP00000008676	E3 ubiquitin-protein ligase NRDP1-like.	annotation not available	0.866
LOC107594019	ENSSGRP00000054308	ENSSGRP00000044911	ENSSGRP00000054308	E3 ubiquitin-protein ligase NRDP1-like.	Ubiquitin specific peptidase 8.	0.997
LOC107594019	usp2	ENSSGRP00000044911	ENSSGRP00000055182	E3 ubiquitin-protein ligase NRDP1-like.	Ubiquitin carboxyl-terminal hydrolase 2.	0.866
rnf41	ENSSGRP00000008676	ENSSGRP00000043749	ENSSGRP00000008676	E3 ubiquitin-protein ligase NRDP1.	annotation not available	0.866
rnf41	ENSSGRP00000054308	ENSSGRP00000043749	ENSSGRP00000054308	E3 ubiquitin-protein ligase NRDP1.	Ubiquitin specific peptidase 8.	0.997
rnf41	usp2	ENSSGRP00000043749	ENSSGRP00000055182	E3 ubiquitin-protein ligase NRDP1.	Ubiquitin carboxyl-terminal hydrolase 2.	0.866
usp2	LOC107594019	ENSSGRP00000055182	ENSSGRP00000044911	Ubiquitin carboxyl-terminal hydrolase 2.	E3 ubiquitin-protein ligase NRDP1-like.	0.866
usp2	rnf41	ENSSGRP00000055182	ENSSGRP00000043749	Ubiquitin carboxyl-terminal hydrolase 2.	E3 ubiquitin-protein ligase NRDP1.	0.866