(160 nodes) Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107552847	Small subunit ribosomal protein S9e. (194 aa)
	ENSSGRP00000001396	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1. (195 aa)
	ENSSGRP00000002289	Small subunit ribosomal protein S3Ae. (111 aa)
	arl6ip1	ADP-ribosylation factor-like protein 6-interacting protein 1. (203 aa)
	FAU	Small subunit ribosomal protein S30e. (133 aa)
	rps29	Small subunit ribosomal protein S29e. (56 aa)
	ENSSGRP00000003561	FAU ubiquitin like and ribosomal protein S30 fusion b. (153 aa)
	rps15a	Small subunit ribosomal protein S15Ae. (100 aa)
	LOC107577535	Large subunit ribosomal protein L36e. (108 aa)
	RPS15A	Small subunit ribosomal protein S15Ae. (91 aa)
	LOC107579695	40S ribosomal protein S20-like. (64 aa)
	ENSSGRP00000005346	Large subunit ribosomal protein L17e. (117 aa)
	ENSSGRP00000005414	annotation not available (135 aa)
	ENSSGRP00000006140	annotation not available (101 aa)
	ENSSGRP00000006291	annotation not available (89 aa)
	RPL26	Large subunit ribosomal protein L26e. (119 aa)
	ENSSGRP00000006676	Small subunit ribosomal protein S19e. (69 aa)
	LOC107585809	40S ribosomal protein S5. (220 aa)
	RPLP2	60S acidic ribosomal protein P2-like. (97 aa)
	ENSSGRP00000007466	Small subunit ribosomal protein SAe. (262 aa)
	ENSSGRP00000007473	annotation not available (46 aa)
	ENSSGRP00000007523	annotation not available (46 aa)
	LOC107559191	Small subunit ribosomal protein S5e. (204 aa)
	LOC107585018	Large subunit ribosomal protein L21e. (160 aa)
	ENSSGRP00000010538	annotation not available (122 aa)
	ENSSGRP00000010903	annotation not available (62 aa)
	ENSSGRP00000011163	annotation not available (58 aa)
	RPL38	Ribosomal protein L38. (52 aa)
	RPS23	Ribosomal protein S23. (133 aa)
	RPL28	Large subunit ribosomal protein L28e. (155 aa)
	LOC107584718	Large subunit ribosomal protein L13e. (210 aa)
	LOC107551103	Large subunit ribosomal protein L24e. (158 aa)
	LOC107549969	Fanconi anemia group E protein-like. (502 aa)
	ENSSGRP00000015325	annotation not available (356 aa)
	LOC107582081	Small subunit ribosomal protein S27e. (122 aa)
	RPS19	Small subunit ribosomal protein S19e. (86 aa)
	ENSSGRP00000016306	Ribosomal protein S17. (124 aa)
	LOC107583572	Large subunit ribosomal protein L13Ae. (205 aa)
	rpl27a	Large subunit ribosomal protein L27Ae. (191 aa)
	ENSSGRP00000017924	annotation not available (54 aa)
	ENSSGRP00000018842	annotation not available (118 aa)
	ENSSGRP00000019849	Ribosomal protein SA. (254 aa)
	RPL24	Large subunit ribosomal protein L24e. (158 aa)
	LOC107551168	Large subunit ribosomal protein L27e. (136 aa)
	LOC107551170	Large subunit ribosomal protein L3e. (403 aa)
	LOC107552847-2	40S ribosomal protein S9. (194 aa)
	LOC107557416	40S ribosomal protein S23. (182 aa)
	ENSSGRP00000024743	Small subunit ribosomal protein S8e. (204 aa)
	ENSSGRP00000025079	Small subunit ribosomal protein S3Ae. (104 aa)
	ENSSGRP00000025080	annotation not available (99 aa)
	LOC107560304	Small subunit ribosomal protein S16e. (146 aa)
	ENSSGRP00000026385	Ribosomal protein L3. (238 aa)
	LOC107551168-2	60S ribosomal protein L27. (136 aa)
	LOC107587392	60S ribosomal protein L12-like. (195 aa)
	LOC107566275	Large subunit ribosomal protein L34e. (117 aa)
	ENSSGRP00000029617	Large subunit ribosomal protein L36e. (111 aa)
	ENSSGRP00000029801	annotation not available (145 aa)
	ENSSGRP00000029816	Small subunit ribosomal protein S14e. (153 aa)
	ENSSGRP00000030573	Ribosomal protein L38. (76 aa)
	LOC107590646	Large subunit ribosomal protein L5e. (296 aa)
	ENSSGRP00000035198	annotation not available (62 aa)
	Rsrc1	Serine/Arginine-related protein 53. (257 aa)
	LOC107568084	Large subunit ribosomal protein L5e. (298 aa)
	rps21	40S ribosomal protein S21 isoform X1. (81 aa)
	LOC107585626	60S ribosomal protein L37 isoform X1. (97 aa)
	ENSSGRP00000036510	Large subunit ribosomal protein L19e. (194 aa)
	LOC107586033	Small subunit ribosomal protein S13e. (151 aa)
	LOC107550225	40S ribosomal protein S27-like. (94 aa)
	Rpl9	Large subunit ribosomal protein L9e. (183 aa)
	LOC107570282	Large subunit ribosomal protein L10e. (261 aa)
	LOC107565436	60S ribosomal protein L36a. (127 aa)
	LOC107568130	H-2 class II histocompatibility antigen gamma chain-like. (234 aa)
	LOC107587580	Small subunit ribosomal protein S10e. (166 aa)
	LOC107571283	Small subunit ribosomal protein S12e. (132 aa)
	rpl29	Large subunit ribosomal protein L29e. (64 aa)
	LOC107591224	Large subunit ribosomal protein L21e. (160 aa)
	ENSSGRP00000047077	Ribosomal protein L5b. (217 aa)
	ENSSGRP00000047297	Ribosomal protein L10. (210 aa)
	LOC107549060	Small subunit ribosomal protein S12e. (132 aa)
	LOC107603014	Small subunit ribosomal protein S6e. (249 aa)
	LOC107583768	Large subunit ribosomal protein L4e. (381 aa)
	LOC107583381	Small subunit ribosomal protein S25e. (124 aa)
	ENSSGRP00000050425	annotation not available (108 aa)
	ENSSGRP00000051201	Ribosomal protein L15. (197 aa)
	LOC107565279	Small subunit ribosomal protein S25e. (124 aa)
	rpl13	Large subunit ribosomal protein L13e. (211 aa)
	ENSSGRP00000052539	Ribosomal protein L13. (144 aa)
	ENSSGRP00000053075	annotation not available (202 aa)
	rps3a	Small subunit ribosomal protein S3Ae. (148 aa)
	LOC107549111	Small subunit ribosomal protein S7e. (217 aa)
	rpl18	Large subunit ribosomal protein L18e. (193 aa)
	LOC107583605	Small subunit ribosomal protein S2e. (279 aa)
	ENSSGRP00000059789	annotation not available (122 aa)
	LOC107593403	Small subunit ribosomal protein S13e. (151 aa)
	ENSSGRP00000059984	Radical S-adenosyl methionine domain containing 1. (347 aa)
	LOC107555664	40S ribosomal protein S2 isoform X1. (279 aa)
	LOC107591317	60S acidic ribosomal protein P2-like. (114 aa)
	LOC107563646	Small subunit ribosomal protein S26e. (115 aa)
	rsad1	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial. (447 aa)
	LOC107567432	Large subunit ribosomal protein L19e. (194 aa)
	rpl7l1	60S ribosomal protein L7-like 1. (247 aa)
	LOC107567628	Large subunit ribosomal protein L37Ae. (92 aa)
	RPS20	Small subunit ribosomal protein S20e. (120 aa)
	LOC107565436-2	Large subunit ribosomal protein L44e. (106 aa)
	rps24	Small subunit ribosomal protein S24e. (152 aa)
	RPL34	60S ribosomal protein L34-like. (116 aa)
	LOC107588630	Paladin-like. (864 aa)
	ENSSGRP00000074205	Small subunit ribosomal protein S27e. (128 aa)
	LOC107555153	Small subunit ribosomal protein S30e. (133 aa)
	LOC107591838	Fanconi anemia group E protein-like. (502 aa)
	ENSSGRP00000075414	Ribosomal protein L32. (125 aa)
	LOC107584398	Large subunit ribosomal protein L7e. (248 aa)
	LOC107596838	Small subunit ribosomal protein S26e. (115 aa)
	LOC107596795	60S acidic ribosomal protein P2-like. (116 aa)
	LOC107587121	Large subunit ribosomal protein L26e. (145 aa)
	LOC107550595	Small subunit ribosomal protein S28e. (69 aa)
	LOC107551827	40S ribosomal protein S6. (252 aa)
	ENSSGRP00000079140	Paladin-like. (818 aa)
	rps19	Small subunit ribosomal protein S19e. (156 aa)
	rpl18a	60S ribosomal protein L18a isoform X1. (176 aa)
	LOC107560304-2	40S ribosomal protein S16. (146 aa)
	LOC107560057	Large subunit ribosomal protein L6e. (265 aa)
	ENSSGRP00000084530	Large subunit ribosomal protein L30e. (112 aa)
	ENSSGRP00000085602	annotation not available (55 aa)
	ENSSGRP00000086242	annotation not available (109 aa)
	ENSSGRP00000087351	Large subunit ribosomal protein LP0. (313 aa)
	ENSSGRP00000088926	Small subunit ribosomal protein S8e. (216 aa)
	LOC107550595-2	40S ribosomal protein S28. (69 aa)
	LOC107554198	Small subunit ribosomal protein S26e. (115 aa)
	LOC107585697	Large subunit ribosomal protein L28e. (148 aa)
	LOC107585626-2	60S ribosomal protein L37. (118 aa)
	RPL7A	Large subunit ribosomal protein L7Ae. (266 aa)
	ENSSGRP00000092845	Small subunit ribosomal protein S14e. (115 aa)
	LOC107585018-2	60S ribosomal protein L21-like. (160 aa)
	LOC107597107	60S ribosomal protein L12 isoform X1. (165 aa)
	LOC107565942	60S ribosomal protein L8 isoform X1. (276 aa)
	ENSSGRP00000095976	annotation not available (70 aa)
	rpl32	Large subunit ribosomal protein L32e. (135 aa)
	ENSSGRP00000097726	Small subunit ribosomal protein SAe. (345 aa)
	LOC107587580-2	40S ribosomal protein S10 isoform X1. (195 aa)
	ENSSGRP00000099532	Small subunit ribosomal protein S28e. (87 aa)
	LOC107565942-2	60S ribosomal protein L8. (257 aa)
	LOC107556383	Large subunit ribosomal protein L30e. (119 aa)
	LOC107559598	60S ribosomal protein L6-like isoform X1. (259 aa)
	ENSSGRP00000102498	Ribosomal protein L36. (102 aa)
	ENSSGRP00000103661	60S acidic ribosomal protein P0-like. (193 aa)
	LOC107588318	H-2 class II histocompatibility antigen gamma chain-like. (232 aa)
	LOC107557416-2	Small subunit ribosomal protein S23e. (198 aa)
	LOC107550715	Large subunit ribosomal protein L7e. (246 aa)
	rpl35a	Large subunit ribosomal protein L35Ae. (110 aa)
	LOC107596972	60S ribosomal protein L4-B-like isoform X1. (380 aa)
	imp3	U3 small nucleolar ribonucleoprotein protein IMP3. (183 aa)
	RPLP1	Large subunit ribosomal protein LP1. (93 aa)
	rps4x	40S ribosomal protein S4, X isoform. (263 aa)
	LOC107557502	40S ribosomal protein S4, X isoform-like. (184 aa)
	Rpl39	Large subunit ribosomal protein L39e. (51 aa)
	LOC107589412	Small subunit ribosomal protein S27e. (112 aa)
	rpl14	Large subunit ribosomal protein L14e. (165 aa)
	rpl5	Large subunit ribosomal protein L5e. (301 aa)
	ENSSGRP00000111846	Large subunit ribosomal protein L18e. (145 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000001396	ENSSGRP00000002289	ENSSGRP00000001396	ENSSGRP00000002289	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	Small subunit ribosomal protein S3Ae.	0.971
ENSSGRP00000001396	ENSSGRP00000003561	ENSSGRP00000001396	ENSSGRP00000003561	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	FAU ubiquitin like and ribosomal protein S30 fusion b.	0.999
ENSSGRP00000001396	ENSSGRP00000005346	ENSSGRP00000001396	ENSSGRP00000005346	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	Large subunit ribosomal protein L17e.	0.993
ENSSGRP00000001396	ENSSGRP00000005414	ENSSGRP00000001396	ENSSGRP00000005414	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	annotation not available	0.980
ENSSGRP00000001396	ENSSGRP00000006140	ENSSGRP00000001396	ENSSGRP00000006140	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	annotation not available	0.986
ENSSGRP00000001396	ENSSGRP00000006291	ENSSGRP00000001396	ENSSGRP00000006291	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	annotation not available	0.976
ENSSGRP00000001396	ENSSGRP00000006676	ENSSGRP00000001396	ENSSGRP00000006676	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	Small subunit ribosomal protein S19e.	0.986
ENSSGRP00000001396	ENSSGRP00000007466	ENSSGRP00000001396	ENSSGRP00000007466	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	Small subunit ribosomal protein SAe.	0.987
ENSSGRP00000001396	ENSSGRP00000007473	ENSSGRP00000001396	ENSSGRP00000007473	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	annotation not available	0.980
ENSSGRP00000001396	ENSSGRP00000007523	ENSSGRP00000001396	ENSSGRP00000007523	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	annotation not available	0.980
ENSSGRP00000001396	ENSSGRP00000010538	ENSSGRP00000001396	ENSSGRP00000010538	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	annotation not available	0.993
ENSSGRP00000001396	ENSSGRP00000010903	ENSSGRP00000001396	ENSSGRP00000010903	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	annotation not available	0.983
ENSSGRP00000001396	ENSSGRP00000011163	ENSSGRP00000001396	ENSSGRP00000011163	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	annotation not available	0.977
ENSSGRP00000001396	ENSSGRP00000015325	ENSSGRP00000001396	ENSSGRP00000015325	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	annotation not available	0.976
ENSSGRP00000001396	ENSSGRP00000016306	ENSSGRP00000001396	ENSSGRP00000016306	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	Ribosomal protein S17.	0.997
ENSSGRP00000001396	ENSSGRP00000017924	ENSSGRP00000001396	ENSSGRP00000017924	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	annotation not available	0.985
ENSSGRP00000001396	ENSSGRP00000018842	ENSSGRP00000001396	ENSSGRP00000018842	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	annotation not available	0.971
ENSSGRP00000001396	ENSSGRP00000019849	ENSSGRP00000001396	ENSSGRP00000019849	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	Ribosomal protein SA.	0.987
ENSSGRP00000001396	ENSSGRP00000024743	ENSSGRP00000001396	ENSSGRP00000024743	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	Small subunit ribosomal protein S8e.	0.994
ENSSGRP00000001396	ENSSGRP00000025079	ENSSGRP00000001396	ENSSGRP00000025079	ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.	Small subunit ribosomal protein S3Ae.	0.971