(29 nodes) Cytosolic large ribosomal subunit, and S4 RNA-binding domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000005346	Large subunit ribosomal protein L17e. (117 aa)
	ENSSGRP00000006140	annotation not available (101 aa)
	LOC107585018	Large subunit ribosomal protein L21e. (160 aa)
	ENSSGRP00000010538	annotation not available (122 aa)
	ENSSGRP00000011163	annotation not available (58 aa)
	ENSSGRP00000016306	Ribosomal protein S17. (124 aa)
	LOC107551168	Large subunit ribosomal protein L27e. (136 aa)
	LOC107552847-2	40S ribosomal protein S9. (194 aa)
	LOC107587392	60S ribosomal protein L12-like. (195 aa)
	ENSSGRP00000030573	Ribosomal protein L38. (76 aa)
	LOC107586033	Small subunit ribosomal protein S13e. (151 aa)
	LOC107565436	60S ribosomal protein L36a. (127 aa)
	LOC107587580	Small subunit ribosomal protein S10e. (166 aa)
	ENSSGRP00000047077	Ribosomal protein L5b. (217 aa)
	LOC107549060	Small subunit ribosomal protein S12e. (132 aa)
	LOC107583381	Small subunit ribosomal protein S25e. (124 aa)
	LOC107583605	Small subunit ribosomal protein S2e. (279 aa)
	rpl7l1	60S ribosomal protein L7-like 1. (247 aa)
	RPL34	60S ribosomal protein L34-like. (116 aa)
	rpl18a	60S ribosomal protein L18a isoform X1. (176 aa)
	ENSSGRP00000085602	annotation not available (55 aa)
	ENSSGRP00000087351	Large subunit ribosomal protein LP0. (313 aa)
	LOC107585697	Large subunit ribosomal protein L28e. (148 aa)
	LOC107585626-2	60S ribosomal protein L37. (118 aa)
	LOC107565942-2	60S ribosomal protein L8. (257 aa)
	rpl35a	Large subunit ribosomal protein L35Ae. (110 aa)
	LOC107596972	60S ribosomal protein L4-B-like isoform X1. (380 aa)
	rps4x	40S ribosomal protein S4, X isoform. (263 aa)
	ENSSGRP00000111846	Large subunit ribosomal protein L18e. (145 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000005346	ENSSGRP00000006140	ENSSGRP00000005346	ENSSGRP00000006140	Large subunit ribosomal protein L17e.	annotation not available	0.999
ENSSGRP00000005346	ENSSGRP00000010538	ENSSGRP00000005346	ENSSGRP00000010538	Large subunit ribosomal protein L17e.	annotation not available	0.999
ENSSGRP00000005346	ENSSGRP00000011163	ENSSGRP00000005346	ENSSGRP00000011163	Large subunit ribosomal protein L17e.	annotation not available	0.999
ENSSGRP00000005346	ENSSGRP00000016306	ENSSGRP00000005346	ENSSGRP00000016306	Large subunit ribosomal protein L17e.	Ribosomal protein S17.	0.999
ENSSGRP00000005346	ENSSGRP00000030573	ENSSGRP00000005346	ENSSGRP00000030573	Large subunit ribosomal protein L17e.	Ribosomal protein L38.	0.999
ENSSGRP00000005346	ENSSGRP00000047077	ENSSGRP00000005346	ENSSGRP00000047077	Large subunit ribosomal protein L17e.	Ribosomal protein L5b.	0.999
ENSSGRP00000005346	ENSSGRP00000085602	ENSSGRP00000005346	ENSSGRP00000085602	Large subunit ribosomal protein L17e.	annotation not available	0.999
ENSSGRP00000005346	ENSSGRP00000087351	ENSSGRP00000005346	ENSSGRP00000087351	Large subunit ribosomal protein L17e.	Large subunit ribosomal protein LP0.	0.999
ENSSGRP00000005346	ENSSGRP00000111846	ENSSGRP00000005346	ENSSGRP00000111846	Large subunit ribosomal protein L17e.	Large subunit ribosomal protein L18e.	0.999
ENSSGRP00000005346	LOC107549060	ENSSGRP00000005346	ENSSGRP00000047814	Large subunit ribosomal protein L17e.	Small subunit ribosomal protein S12e.	0.999
ENSSGRP00000005346	LOC107551168	ENSSGRP00000005346	ENSSGRP00000023316	Large subunit ribosomal protein L17e.	Large subunit ribosomal protein L27e.	0.999
ENSSGRP00000005346	LOC107552847-2	ENSSGRP00000005346	ENSSGRP00000024179	Large subunit ribosomal protein L17e.	40S ribosomal protein S9.	0.999
ENSSGRP00000005346	LOC107565436	ENSSGRP00000005346	ENSSGRP00000042295	Large subunit ribosomal protein L17e.	60S ribosomal protein L36a.	0.999
ENSSGRP00000005346	LOC107565942-2	ENSSGRP00000005346	ENSSGRP00000100220	Large subunit ribosomal protein L17e.	60S ribosomal protein L8.	0.999
ENSSGRP00000005346	LOC107583381	ENSSGRP00000005346	ENSSGRP00000049965	Large subunit ribosomal protein L17e.	Small subunit ribosomal protein S25e.	0.999
ENSSGRP00000005346	LOC107583605	ENSSGRP00000005346	ENSSGRP00000059534	Large subunit ribosomal protein L17e.	Small subunit ribosomal protein S2e.	0.999
ENSSGRP00000005346	LOC107585018	ENSSGRP00000005346	ENSSGRP00000008505	Large subunit ribosomal protein L17e.	Large subunit ribosomal protein L21e.	0.999
ENSSGRP00000005346	LOC107585626-2	ENSSGRP00000005346	ENSSGRP00000090427	Large subunit ribosomal protein L17e.	60S ribosomal protein L37.	0.999
ENSSGRP00000005346	LOC107585697	ENSSGRP00000005346	ENSSGRP00000090058	Large subunit ribosomal protein L17e.	Large subunit ribosomal protein L28e.	0.999
ENSSGRP00000005346	LOC107586033	ENSSGRP00000005346	ENSSGRP00000037428	Large subunit ribosomal protein L17e.	Small subunit ribosomal protein S13e.	0.999