(36 nodes) Cytosolic large ribosomal subunit, and Cytosolic small ribosomal subunit network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107552847	Small subunit ribosomal protein S9e. (194 aa)
	LOC107559191	Small subunit ribosomal protein S5e. (204 aa)
	RPL38	Ribosomal protein L38. (52 aa)
	LOC107551103	Large subunit ribosomal protein L24e. (158 aa)
	rpl27a	Large subunit ribosomal protein L27Ae. (191 aa)
	LOC107551170	Large subunit ribosomal protein L3e. (403 aa)
	LOC107551168-2	60S ribosomal protein L27. (136 aa)
	LOC107566275	Large subunit ribosomal protein L34e. (117 aa)
	LOC107590646	Large subunit ribosomal protein L5e. (296 aa)
	rps21	40S ribosomal protein S21 isoform X1. (81 aa)
	LOC107585626	60S ribosomal protein L37 isoform X1. (97 aa)
	ENSSGRP00000036510	Large subunit ribosomal protein L19e. (194 aa)
	Rpl9	Large subunit ribosomal protein L9e. (183 aa)
	LOC107571283	Small subunit ribosomal protein S12e. (132 aa)
	rpl29	Large subunit ribosomal protein L29e. (64 aa)
	ENSSGRP00000047297	Ribosomal protein L10. (210 aa)
	ENSSGRP00000050425	annotation not available (108 aa)
	ENSSGRP00000051201	Ribosomal protein L15. (197 aa)
	LOC107565279	Small subunit ribosomal protein S25e. (124 aa)
	ENSSGRP00000052539	Ribosomal protein L13. (144 aa)
	LOC107567628	Large subunit ribosomal protein L37Ae. (92 aa)
	LOC107565436-2	Large subunit ribosomal protein L44e. (106 aa)
	ENSSGRP00000075414	Ribosomal protein L32. (125 aa)
	LOC107587121	Large subunit ribosomal protein L26e. (145 aa)
	LOC107560304-2	40S ribosomal protein S16. (146 aa)
	LOC107560057	Large subunit ribosomal protein L6e. (265 aa)
	ENSSGRP00000084530	Large subunit ribosomal protein L30e. (112 aa)
	ENSSGRP00000088926	Small subunit ribosomal protein S8e. (216 aa)
	RPL7A	Large subunit ribosomal protein L7Ae. (266 aa)
	LOC107585018-2	60S ribosomal protein L21-like. (160 aa)
	LOC107565942	60S ribosomal protein L8 isoform X1. (276 aa)
	LOC107587580-2	40S ribosomal protein S10 isoform X1. (195 aa)
	ENSSGRP00000103661	60S acidic ribosomal protein P0-like. (193 aa)
	RPLP1	Large subunit ribosomal protein LP1. (93 aa)
	Rpl39	Large subunit ribosomal protein L39e. (51 aa)
	rpl14	Large subunit ribosomal protein L14e. (165 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000036510	ENSSGRP00000047297	ENSSGRP00000036510	ENSSGRP00000047297	Large subunit ribosomal protein L19e.	Ribosomal protein L10.	0.999
ENSSGRP00000036510	ENSSGRP00000050425	ENSSGRP00000036510	ENSSGRP00000050425	Large subunit ribosomal protein L19e.	annotation not available	0.999
ENSSGRP00000036510	ENSSGRP00000051201	ENSSGRP00000036510	ENSSGRP00000051201	Large subunit ribosomal protein L19e.	Ribosomal protein L15.	0.999
ENSSGRP00000036510	ENSSGRP00000052539	ENSSGRP00000036510	ENSSGRP00000052539	Large subunit ribosomal protein L19e.	Ribosomal protein L13.	0.997
ENSSGRP00000036510	ENSSGRP00000075414	ENSSGRP00000036510	ENSSGRP00000075414	Large subunit ribosomal protein L19e.	Ribosomal protein L32.	0.999
ENSSGRP00000036510	ENSSGRP00000084530	ENSSGRP00000036510	ENSSGRP00000084530	Large subunit ribosomal protein L19e.	Large subunit ribosomal protein L30e.	0.999
ENSSGRP00000036510	ENSSGRP00000088926	ENSSGRP00000036510	ENSSGRP00000088926	Large subunit ribosomal protein L19e.	Small subunit ribosomal protein S8e.	0.999
ENSSGRP00000036510	ENSSGRP00000103661	ENSSGRP00000036510	ENSSGRP00000103661	Large subunit ribosomal protein L19e.	60S acidic ribosomal protein P0-like.	0.999
ENSSGRP00000036510	LOC107551103	ENSSGRP00000036510	ENSSGRP00000012759	Large subunit ribosomal protein L19e.	Large subunit ribosomal protein L24e.	0.999
ENSSGRP00000036510	LOC107551168-2	ENSSGRP00000036510	ENSSGRP00000026543	Large subunit ribosomal protein L19e.	60S ribosomal protein L27.	0.999
ENSSGRP00000036510	LOC107551170	ENSSGRP00000036510	ENSSGRP00000023870	Large subunit ribosomal protein L19e.	Large subunit ribosomal protein L3e.	0.999
ENSSGRP00000036510	LOC107552847	ENSSGRP00000036510	ENSSGRP00000000680	Large subunit ribosomal protein L19e.	Small subunit ribosomal protein S9e.	0.999
ENSSGRP00000036510	LOC107559191	ENSSGRP00000036510	ENSSGRP00000008452	Large subunit ribosomal protein L19e.	Small subunit ribosomal protein S5e.	0.998
ENSSGRP00000036510	LOC107560057	ENSSGRP00000036510	ENSSGRP00000084367	Large subunit ribosomal protein L19e.	Large subunit ribosomal protein L6e.	0.999
ENSSGRP00000036510	LOC107560304-2	ENSSGRP00000036510	ENSSGRP00000083133	Large subunit ribosomal protein L19e.	40S ribosomal protein S16.	0.999
ENSSGRP00000036510	LOC107565279	ENSSGRP00000036510	ENSSGRP00000051455	Large subunit ribosomal protein L19e.	Small subunit ribosomal protein S25e.	0.999
ENSSGRP00000036510	LOC107565436-2	ENSSGRP00000036510	ENSSGRP00000070813	Large subunit ribosomal protein L19e.	Large subunit ribosomal protein L44e.	0.999
ENSSGRP00000036510	LOC107565942	ENSSGRP00000036510	ENSSGRP00000093660	Large subunit ribosomal protein L19e.	60S ribosomal protein L8 isoform X1.	0.999
ENSSGRP00000036510	LOC107566275	ENSSGRP00000036510	ENSSGRP00000028332	Large subunit ribosomal protein L19e.	Large subunit ribosomal protein L34e.	0.999
ENSSGRP00000036510	LOC107567628	ENSSGRP00000036510	ENSSGRP00000067018	Large subunit ribosomal protein L19e.	Large subunit ribosomal protein L37Ae.	0.999