(20 nodes) Organellar large ribosomal subunit, and Ribosomal protein L5 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPS15	Ribosomal protein S15. (133 aa)
	ENSSGRP00000006575	annotation not available (65 aa)
	LOC107589447	Large subunit ribosomal protein L11e. (178 aa)
	ENSSGRP00000011939	Mitochondrial ribosomal protein L24. (291 aa)
	ENSSGRP00000016671	39S ribosomal protein L4, mitochondrial. (297 aa)
	MRPL13	Mitochondrial ribosomal protein L13. (210 aa)
	Mrpl27	39S ribosomal protein L27, mitochondrial. (148 aa)
	Mrpl2	39S ribosomal protein L2, mitochondrial isoform X1. (285 aa)
	LOC107559921	28S ribosomal protein S9, mitochondrial-like. (386 aa)
	mrpl15	39S ribosomal protein L15, mitochondrial. (300 aa)
	LOC107561043	39S ribosomal protein L11, mitochondrial-like. (193 aa)
	mrps16	28S ribosomal protein S16, mitochondrial. (135 aa)
	mrpl16	39S ribosomal protein L16, mitochondrial isoform X1. (255 aa)
	LOC107595760	39S ribosomal protein L17, mitochondrial-like. (168 aa)
	ENSSGRP00000084072	Large subunit ribosomal protein L23Ae. (68 aa)
	mrpl3	39S ribosomal protein L3, mitochondrial isoform X1. (351 aa)
	ENSSGRP00000104688	annotation not available (64 aa)
	ENSSGRP00000106784	annotation not available (187 aa)
	LOC107589512	39S ribosomal protein L9, mitochondrial-like. (248 aa)
	Mrpl21	39S ribosomal protein L21, mitochondrial. (174 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000006575	ENSSGRP00000011939	ENSSGRP00000006575	ENSSGRP00000011939	annotation not available	Mitochondrial ribosomal protein L24.	0.997
ENSSGRP00000006575	ENSSGRP00000016671	ENSSGRP00000006575	ENSSGRP00000016671	annotation not available	39S ribosomal protein L4, mitochondrial.	0.998
ENSSGRP00000006575	ENSSGRP00000084072	ENSSGRP00000006575	ENSSGRP00000084072	annotation not available	Large subunit ribosomal protein L23Ae.	0.999
ENSSGRP00000006575	ENSSGRP00000104688	ENSSGRP00000006575	ENSSGRP00000104688	annotation not available	annotation not available	0.996
ENSSGRP00000006575	ENSSGRP00000106784	ENSSGRP00000006575	ENSSGRP00000106784	annotation not available	annotation not available	0.999
ENSSGRP00000006575	LOC107559921	ENSSGRP00000006575	ENSSGRP00000048974	annotation not available	28S ribosomal protein S9, mitochondrial-like.	0.999
ENSSGRP00000006575	LOC107561043	ENSSGRP00000006575	ENSSGRP00000072017	annotation not available	39S ribosomal protein L11, mitochondrial-like.	0.997
ENSSGRP00000006575	LOC107589447	ENSSGRP00000006575	ENSSGRP00000011414	annotation not available	Large subunit ribosomal protein L11e.	0.999
ENSSGRP00000006575	LOC107589512	ENSSGRP00000006575	ENSSGRP00000111589	annotation not available	39S ribosomal protein L9, mitochondrial-like.	0.998
ENSSGRP00000006575	LOC107595760	ENSSGRP00000006575	ENSSGRP00000081339	annotation not available	39S ribosomal protein L17, mitochondrial-like.	0.999
ENSSGRP00000006575	MRPL13	ENSSGRP00000006575	ENSSGRP00000025378	annotation not available	Mitochondrial ribosomal protein L13.	0.999
ENSSGRP00000006575	Mrpl2	ENSSGRP00000006575	ENSSGRP00000032193	annotation not available	39S ribosomal protein L2, mitochondrial isoform X1.	0.999
ENSSGRP00000006575	Mrpl21	ENSSGRP00000006575	ENSSGRP00000112554	annotation not available	39S ribosomal protein L21, mitochondrial.	0.999
ENSSGRP00000006575	Mrpl27	ENSSGRP00000006575	ENSSGRP00000029945	annotation not available	39S ribosomal protein L27, mitochondrial.	0.998
ENSSGRP00000006575	RPS15	ENSSGRP00000006575	ENSSGRP00000004631	annotation not available	Ribosomal protein S15.	0.999
ENSSGRP00000006575	mrpl15	ENSSGRP00000006575	ENSSGRP00000067290	annotation not available	39S ribosomal protein L15, mitochondrial.	0.999
ENSSGRP00000006575	mrpl16	ENSSGRP00000006575	ENSSGRP00000079065	annotation not available	39S ribosomal protein L16, mitochondrial isoform X1.	0.999
ENSSGRP00000006575	mrpl3	ENSSGRP00000006575	ENSSGRP00000100751	annotation not available	39S ribosomal protein L3, mitochondrial isoform X1.	0.999
ENSSGRP00000006575	mrps16	ENSSGRP00000006575	ENSSGRP00000079048	annotation not available	28S ribosomal protein S16, mitochondrial.	0.999
ENSSGRP00000011939	ENSSGRP00000006575	ENSSGRP00000011939	ENSSGRP00000006575	Mitochondrial ribosomal protein L24.	annotation not available	0.997