(7 nodes) Mixed, incl. Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A, and Ribosomal protein L13 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000006575	annotation not available (65 aa)
	ENSSGRP00000016671	39S ribosomal protein L4, mitochondrial. (297 aa)
	MRPL13	Mitochondrial ribosomal protein L13. (210 aa)
	mrpl15	39S ribosomal protein L15, mitochondrial. (300 aa)
	mrpl16	39S ribosomal protein L16, mitochondrial isoform X1. (255 aa)
	ENSSGRP00000106784	annotation not available (187 aa)
	Mrpl21	39S ribosomal protein L21, mitochondrial. (174 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000006575	ENSSGRP00000016671	ENSSGRP00000006575	ENSSGRP00000016671	annotation not available	39S ribosomal protein L4, mitochondrial.	0.998
ENSSGRP00000006575	ENSSGRP00000106784	ENSSGRP00000006575	ENSSGRP00000106784	annotation not available	annotation not available	0.999
ENSSGRP00000006575	MRPL13	ENSSGRP00000006575	ENSSGRP00000025378	annotation not available	Mitochondrial ribosomal protein L13.	0.999
ENSSGRP00000006575	Mrpl21	ENSSGRP00000006575	ENSSGRP00000112554	annotation not available	39S ribosomal protein L21, mitochondrial.	0.999
ENSSGRP00000006575	mrpl15	ENSSGRP00000006575	ENSSGRP00000067290	annotation not available	39S ribosomal protein L15, mitochondrial.	0.999
ENSSGRP00000006575	mrpl16	ENSSGRP00000006575	ENSSGRP00000079065	annotation not available	39S ribosomal protein L16, mitochondrial isoform X1.	0.999
ENSSGRP00000016671	ENSSGRP00000006575	ENSSGRP00000016671	ENSSGRP00000006575	39S ribosomal protein L4, mitochondrial.	annotation not available	0.998
ENSSGRP00000016671	ENSSGRP00000106784	ENSSGRP00000016671	ENSSGRP00000106784	39S ribosomal protein L4, mitochondrial.	annotation not available	0.998
ENSSGRP00000016671	MRPL13	ENSSGRP00000016671	ENSSGRP00000025378	39S ribosomal protein L4, mitochondrial.	Mitochondrial ribosomal protein L13.	0.998
ENSSGRP00000016671	Mrpl21	ENSSGRP00000016671	ENSSGRP00000112554	39S ribosomal protein L4, mitochondrial.	39S ribosomal protein L21, mitochondrial.	0.999
ENSSGRP00000016671	mrpl15	ENSSGRP00000016671	ENSSGRP00000067290	39S ribosomal protein L4, mitochondrial.	39S ribosomal protein L15, mitochondrial.	0.999
ENSSGRP00000016671	mrpl16	ENSSGRP00000016671	ENSSGRP00000079065	39S ribosomal protein L4, mitochondrial.	39S ribosomal protein L16, mitochondrial isoform X1.	0.998
ENSSGRP00000106784	ENSSGRP00000006575	ENSSGRP00000106784	ENSSGRP00000006575	annotation not available	annotation not available	0.999
ENSSGRP00000106784	ENSSGRP00000016671	ENSSGRP00000106784	ENSSGRP00000016671	annotation not available	39S ribosomal protein L4, mitochondrial.	0.998
ENSSGRP00000106784	MRPL13	ENSSGRP00000106784	ENSSGRP00000025378	annotation not available	Mitochondrial ribosomal protein L13.	0.999
ENSSGRP00000106784	Mrpl21	ENSSGRP00000106784	ENSSGRP00000112554	annotation not available	39S ribosomal protein L21, mitochondrial.	0.999
ENSSGRP00000106784	mrpl15	ENSSGRP00000106784	ENSSGRP00000067290	annotation not available	39S ribosomal protein L15, mitochondrial.	0.999
ENSSGRP00000106784	mrpl16	ENSSGRP00000106784	ENSSGRP00000079065	annotation not available	39S ribosomal protein L16, mitochondrial isoform X1.	0.999
MRPL13	ENSSGRP00000006575	ENSSGRP00000025378	ENSSGRP00000006575	Mitochondrial ribosomal protein L13.	annotation not available	0.999
MRPL13	ENSSGRP00000016671	ENSSGRP00000025378	ENSSGRP00000016671	Mitochondrial ribosomal protein L13.	39S ribosomal protein L4, mitochondrial.	0.998