(5 nodes) Mixed, incl. Non-sequence-specific DNA binding, bending, and CAF-1 complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000039351	Sin3 histone deacetylase corepressor complex component SDS3-like isoform X1. (322 aa)
	ENSSGRP00000079712	annotation not available (155 aa)
	ENSSGRP00000087320	AT-rich interactive domain-containing protein 4B-like. (151 aa)
	LOC107562876	Probable histone deacetylase 1-B. (490 aa)
	LOC107568807	Histone-binding protein RBBP4. (451 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000039351	ENSSGRP00000079712	ENSSGRP00000039351	ENSSGRP00000079712	Sin3 histone deacetylase corepressor complex component SDS3-like isoform X1.	annotation not available	0.949
ENSSGRP00000039351	ENSSGRP00000087320	ENSSGRP00000039351	ENSSGRP00000087320	Sin3 histone deacetylase corepressor complex component SDS3-like isoform X1.	AT-rich interactive domain-containing protein 4B-like.	0.983
ENSSGRP00000039351	LOC107562876	ENSSGRP00000039351	ENSSGRP00000101393	Sin3 histone deacetylase corepressor complex component SDS3-like isoform X1.	Probable histone deacetylase 1-B.	0.932
ENSSGRP00000039351	LOC107568807	ENSSGRP00000039351	ENSSGRP00000102072	Sin3 histone deacetylase corepressor complex component SDS3-like isoform X1.	Histone-binding protein RBBP4.	0.941
ENSSGRP00000079712	ENSSGRP00000039351	ENSSGRP00000079712	ENSSGRP00000039351	annotation not available	Sin3 histone deacetylase corepressor complex component SDS3-like isoform X1.	0.949
ENSSGRP00000079712	ENSSGRP00000087320	ENSSGRP00000079712	ENSSGRP00000087320	annotation not available	AT-rich interactive domain-containing protein 4B-like.	0.991
ENSSGRP00000079712	LOC107562876	ENSSGRP00000079712	ENSSGRP00000101393	annotation not available	Probable histone deacetylase 1-B.	0.849
ENSSGRP00000079712	LOC107568807	ENSSGRP00000079712	ENSSGRP00000102072	annotation not available	Histone-binding protein RBBP4.	0.878
ENSSGRP00000087320	ENSSGRP00000039351	ENSSGRP00000087320	ENSSGRP00000039351	AT-rich interactive domain-containing protein 4B-like.	Sin3 histone deacetylase corepressor complex component SDS3-like isoform X1.	0.983
ENSSGRP00000087320	ENSSGRP00000079712	ENSSGRP00000087320	ENSSGRP00000079712	AT-rich interactive domain-containing protein 4B-like.	annotation not available	0.991
ENSSGRP00000087320	LOC107562876	ENSSGRP00000087320	ENSSGRP00000101393	AT-rich interactive domain-containing protein 4B-like.	Probable histone deacetylase 1-B.	0.986
ENSSGRP00000087320	LOC107568807	ENSSGRP00000087320	ENSSGRP00000102072	AT-rich interactive domain-containing protein 4B-like.	Histone-binding protein RBBP4.	0.993
LOC107562876	ENSSGRP00000039351	ENSSGRP00000101393	ENSSGRP00000039351	Probable histone deacetylase 1-B.	Sin3 histone deacetylase corepressor complex component SDS3-like isoform X1.	0.932
LOC107562876	ENSSGRP00000079712	ENSSGRP00000101393	ENSSGRP00000079712	Probable histone deacetylase 1-B.	annotation not available	0.849
LOC107562876	ENSSGRP00000087320	ENSSGRP00000101393	ENSSGRP00000087320	Probable histone deacetylase 1-B.	AT-rich interactive domain-containing protein 4B-like.	0.986
LOC107562876	LOC107568807	ENSSGRP00000101393	ENSSGRP00000102072	Probable histone deacetylase 1-B.	Histone-binding protein RBBP4.	0.921
LOC107568807	ENSSGRP00000039351	ENSSGRP00000102072	ENSSGRP00000039351	Histone-binding protein RBBP4.	Sin3 histone deacetylase corepressor complex component SDS3-like isoform X1.	0.941
LOC107568807	ENSSGRP00000079712	ENSSGRP00000102072	ENSSGRP00000079712	Histone-binding protein RBBP4.	annotation not available	0.878
LOC107568807	ENSSGRP00000087320	ENSSGRP00000102072	ENSSGRP00000087320	Histone-binding protein RBBP4.	AT-rich interactive domain-containing protein 4B-like.	0.993
LOC107568807	LOC107562876	ENSSGRP00000102072	ENSSGRP00000101393	Histone-binding protein RBBP4.	Probable histone deacetylase 1-B.	0.921