(6 nodes) Endodermal cell fate commitment network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107593758	Parafibromin. (530 aa)
	ENSSGRP00000096558	Parafibromin-like. (458 aa)
	rtf1	RNA polymerase-associated protein RTF1 homolog isoform X1. (716 aa)
	LOC107588567	RNA polymerase-associated protein RTF1 homolog. (678 aa)
	LOC107553014	RNA polymerase-associated protein CTR9 homolog. (1159 aa)
	ENSSGRP00000025310	RNA polymerase-associated protein CTR9 homolog. (1117 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000025310	ENSSGRP00000096558	ENSSGRP00000025310	ENSSGRP00000096558	RNA polymerase-associated protein CTR9 homolog.	Parafibromin-like.	0.996
ENSSGRP00000025310	LOC107588567	ENSSGRP00000025310	ENSSGRP00000057106	RNA polymerase-associated protein CTR9 homolog.	RNA polymerase-associated protein RTF1 homolog.	0.994
ENSSGRP00000025310	LOC107593758	ENSSGRP00000025310	ENSSGRP00000107347	RNA polymerase-associated protein CTR9 homolog.	Parafibromin.	0.996
ENSSGRP00000025310	rtf1	ENSSGRP00000025310	ENSSGRP00000072037	RNA polymerase-associated protein CTR9 homolog.	RNA polymerase-associated protein RTF1 homolog isoform X1.	0.994
ENSSGRP00000096558	ENSSGRP00000025310	ENSSGRP00000096558	ENSSGRP00000025310	Parafibromin-like.	RNA polymerase-associated protein CTR9 homolog.	0.996
ENSSGRP00000096558	LOC107553014	ENSSGRP00000096558	ENSSGRP00000055838	Parafibromin-like.	RNA polymerase-associated protein CTR9 homolog.	0.996
ENSSGRP00000096558	LOC107588567	ENSSGRP00000096558	ENSSGRP00000057106	Parafibromin-like.	RNA polymerase-associated protein RTF1 homolog.	0.993
ENSSGRP00000096558	rtf1	ENSSGRP00000096558	ENSSGRP00000072037	Parafibromin-like.	RNA polymerase-associated protein RTF1 homolog isoform X1.	0.993
LOC107553014	ENSSGRP00000096558	ENSSGRP00000055838	ENSSGRP00000096558	RNA polymerase-associated protein CTR9 homolog.	Parafibromin-like.	0.996
LOC107553014	LOC107588567	ENSSGRP00000055838	ENSSGRP00000057106	RNA polymerase-associated protein CTR9 homolog.	RNA polymerase-associated protein RTF1 homolog.	0.994
LOC107553014	LOC107593758	ENSSGRP00000055838	ENSSGRP00000107347	RNA polymerase-associated protein CTR9 homolog.	Parafibromin.	0.996
LOC107553014	rtf1	ENSSGRP00000055838	ENSSGRP00000072037	RNA polymerase-associated protein CTR9 homolog.	RNA polymerase-associated protein RTF1 homolog isoform X1.	0.994
LOC107588567	ENSSGRP00000025310	ENSSGRP00000057106	ENSSGRP00000025310	RNA polymerase-associated protein RTF1 homolog.	RNA polymerase-associated protein CTR9 homolog.	0.994
LOC107588567	ENSSGRP00000096558	ENSSGRP00000057106	ENSSGRP00000096558	RNA polymerase-associated protein RTF1 homolog.	Parafibromin-like.	0.993
LOC107588567	LOC107553014	ENSSGRP00000057106	ENSSGRP00000055838	RNA polymerase-associated protein RTF1 homolog.	RNA polymerase-associated protein CTR9 homolog.	0.994
LOC107588567	LOC107593758	ENSSGRP00000057106	ENSSGRP00000107347	RNA polymerase-associated protein RTF1 homolog.	Parafibromin.	0.993
LOC107593758	ENSSGRP00000025310	ENSSGRP00000107347	ENSSGRP00000025310	Parafibromin.	RNA polymerase-associated protein CTR9 homolog.	0.996
LOC107593758	LOC107553014	ENSSGRP00000107347	ENSSGRP00000055838	Parafibromin.	RNA polymerase-associated protein CTR9 homolog.	0.996
LOC107593758	LOC107588567	ENSSGRP00000107347	ENSSGRP00000057106	Parafibromin.	RNA polymerase-associated protein RTF1 homolog.	0.993
LOC107593758	rtf1	ENSSGRP00000107347	ENSSGRP00000072037	Parafibromin.	RNA polymerase-associated protein RTF1 homolog isoform X1.	0.993