(15 nodes) U6 snRNA binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	larp7	La-related protein 7. (568 aa)
	LOC107571494	Pre-mRNA-splicing factor RBM22/SLT11. (422 aa)
	LOC107597276	Squamous cell carcinoma antigen recognized by T-cells 3. (959 aa)
	LOC107548576	Pre-mRNA-processing-splicing factor 8-like isoform X1. (2342 aa)
	LOC107562728	U6 snRNA-associated Sm-like protein LSm3. (102 aa)
	ENSSGRP00000080948	pre-mRNA processing factor 8. (2322 aa)
	LOC107595944	Squamous cell carcinoma antigen recognized by T-cells 3-like. (955 aa)
	ENSSGRP00000104707	Methyltransferase like 16. (453 aa)
	ENSSGRP00000092965	Pre-mRNA-splicing factor RBM22/SLT11. (381 aa)
	LOC107553538	U6 snRNA-associated Sm-like protein LSm4 isoform X1. (142 aa)
	ENSSGRP00000001226	U6 snRNA-associated Sm-like protein LSm3. (104 aa)
	ENSSGRP00000018739	U6 snRNA-associated Sm-like protein LSm4. (102 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3. (102 aa)
	prpf4	U4/U6 small nuclear ribonucleoprotein PRP4. (525 aa)
	LOC107590066	Pre-mRNA-splicing factor RBM22/SLT11. (424 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000001226	ENSSGRP00000018739	ENSSGRP00000001226	ENSSGRP00000018739	U6 snRNA-associated Sm-like protein LSm3.	U6 snRNA-associated Sm-like protein LSm4.	0.998
ENSSGRP00000001226	ENSSGRP00000080948	ENSSGRP00000001226	ENSSGRP00000080948	U6 snRNA-associated Sm-like protein LSm3.	pre-mRNA processing factor 8.	0.903
ENSSGRP00000001226	ENSSGRP00000092965	ENSSGRP00000001226	ENSSGRP00000092965	U6 snRNA-associated Sm-like protein LSm3.	Pre-mRNA-splicing factor RBM22/SLT11.	0.512
ENSSGRP00000001226	LOC107548576	ENSSGRP00000001226	ENSSGRP00000064131	U6 snRNA-associated Sm-like protein LSm3.	Pre-mRNA-processing-splicing factor 8-like isoform X1.	0.903
ENSSGRP00000001226	LOC107553538	ENSSGRP00000001226	ENSSGRP00000086395	U6 snRNA-associated Sm-like protein LSm3.	U6 snRNA-associated Sm-like protein LSm4 isoform X1.	0.998
ENSSGRP00000001226	LOC107571494	ENSSGRP00000001226	ENSSGRP00000045019	U6 snRNA-associated Sm-like protein LSm3.	Pre-mRNA-splicing factor RBM22/SLT11.	0.512
ENSSGRP00000001226	LOC107590066	ENSSGRP00000001226	ENSSGRP00000029713	U6 snRNA-associated Sm-like protein LSm3.	Pre-mRNA-splicing factor RBM22/SLT11.	0.512
ENSSGRP00000001226	LOC107595944	ENSSGRP00000001226	ENSSGRP00000110479	U6 snRNA-associated Sm-like protein LSm3.	Squamous cell carcinoma antigen recognized by T-cells 3-like.	0.896
ENSSGRP00000001226	LOC107597276	ENSSGRP00000001226	ENSSGRP00000057543	U6 snRNA-associated Sm-like protein LSm3.	Squamous cell carcinoma antigen recognized by T-cells 3.	0.896
ENSSGRP00000001226	LSM3	ENSSGRP00000001226	ENSSGRP00000022114	U6 snRNA-associated Sm-like protein LSm3.	U6 snRNA-associated Sm-like protein LSm3.	0.901
ENSSGRP00000001226	prpf4	ENSSGRP00000001226	ENSSGRP00000029521	U6 snRNA-associated Sm-like protein LSm3.	U4/U6 small nuclear ribonucleoprotein PRP4.	0.940
ENSSGRP00000018739	ENSSGRP00000001226	ENSSGRP00000018739	ENSSGRP00000001226	U6 snRNA-associated Sm-like protein LSm4.	U6 snRNA-associated Sm-like protein LSm3.	0.998
ENSSGRP00000018739	ENSSGRP00000080948	ENSSGRP00000018739	ENSSGRP00000080948	U6 snRNA-associated Sm-like protein LSm4.	pre-mRNA processing factor 8.	0.964
ENSSGRP00000018739	ENSSGRP00000092965	ENSSGRP00000018739	ENSSGRP00000092965	U6 snRNA-associated Sm-like protein LSm4.	Pre-mRNA-splicing factor RBM22/SLT11.	0.596
ENSSGRP00000018739	LOC107548576	ENSSGRP00000018739	ENSSGRP00000064131	U6 snRNA-associated Sm-like protein LSm4.	Pre-mRNA-processing-splicing factor 8-like isoform X1.	0.964
ENSSGRP00000018739	LOC107553538	ENSSGRP00000018739	ENSSGRP00000086395	U6 snRNA-associated Sm-like protein LSm4.	U6 snRNA-associated Sm-like protein LSm4 isoform X1.	0.900
ENSSGRP00000018739	LOC107562728	ENSSGRP00000018739	ENSSGRP00000074209	U6 snRNA-associated Sm-like protein LSm4.	U6 snRNA-associated Sm-like protein LSm3.	0.981
ENSSGRP00000018739	LOC107571494	ENSSGRP00000018739	ENSSGRP00000045019	U6 snRNA-associated Sm-like protein LSm4.	Pre-mRNA-splicing factor RBM22/SLT11.	0.596
ENSSGRP00000018739	LOC107590066	ENSSGRP00000018739	ENSSGRP00000029713	U6 snRNA-associated Sm-like protein LSm4.	Pre-mRNA-splicing factor RBM22/SLT11.	0.596
ENSSGRP00000018739	LOC107595944	ENSSGRP00000018739	ENSSGRP00000110479	U6 snRNA-associated Sm-like protein LSm4.	Squamous cell carcinoma antigen recognized by T-cells 3-like.	0.985