(74 nodes) Stem cell population maintenance network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000091163	Vacuolar protein sorting 72 homolog b. (267 aa)
	ENSSGRP00000091770	Cadherin 2, type 1, N-cadherin. (916 aa)
	LOC107549518	Fez family zinc finger protein 2-like. (436 aa)
	ENSSGRP00000094608	Failed axon connections homolog. (128 aa)
	ENSSGRP00000096558	Parafibromin-like. (458 aa)
	LOC107591585	MRNA m6A methyltransferase non-catalytic subunit. (456 aa)
	LOC107591586	N6-adenosine-methyltransferase subunit METTL14-like. (356 aa)
	lig4	DNA ligase 4. (910 aa)
	ENSSGRP00000099447	Structural maintenance of chromosomes 3. (1197 aa)
	LOC107593653	Zinc fingers and homeoboxes protein 2-like. (805 aa)
	ENSSGRP00000101772	annotation not available (132 aa)
	LOC107565076	Microcephalin-like. (643 aa)
	LOC107548281	U6 snRNA-associated Sm-like protein LSm1. (133 aa)
	LOC107593758	Parafibromin. (530 aa)
	LOC107595909	Protein lin-28 homolog A-like. (208 aa)
	ENSSGRP00000108375	PR domain zinc finger protein 14-like. (569 aa)
	ENSSGRP00000110678	Replication timing regulatory factor 1. (2339 aa)
	ENSSGRP00000110983	Sal-like protein 4. (1089 aa)
	LOC107561271	Piwi-like protein 2. (1046 aa)
	Pcm1	Pericentriolar material 1 protein. (1999 aa)
	ENSSGRP00000005880	T-cell acute lymphocytic leukemia protein 1 homolog. (183 aa)
	ENSSGRP00000011297	annotation not available (159 aa)
	vps72	Vacuolar protein sorting-associated protein 72 homolog. (385 aa)
	ENSSGRP00000013721	Nanos homolog 2. (154 aa)
	ENSSGRP00000013735	Fibroblast growth factor 4. (68 aa)
	ENSSGRP00000013737	Fibroblast growth factor 4. (204 aa)
	ENSSGRP00000017277	PR domain zinc finger protein 14-like. (561 aa)
	ENSSGRP00000018162	Protein lin-28 homolog A isoform X1. (163 aa)
	LOC107552822	Failed axon connections homolog. (410 aa)
	ENSSGRP00000022057	FA complementation group C. (551 aa)
	LOC107560293	N6-adenosine-methyltransferase subunit METTL3-like isoform X1. (582 aa)
	HESX1	HESX homeobox 1. (118 aa)
	ENSSGRP00000025310	RNA polymerase-associated protein CTR9 homolog. (1117 aa)
	ENSSGRP00000026478	LOW QUALITY PROTEIN: Fanconi anemia group D2 protein-like. (1198 aa)
	LOC107584753	Fibroblast growth factor 4B-like. (191 aa)
	LOC107581594	Probable E3 ubiquitin-protein ligase TRIM8 isoform X1. (564 aa)
	ENSSGRP00000037278	Pericentriolar material 1 protein-like. (1802 aa)
	LOC107585243	Probable E3 ubiquitin-protein ligase TRIM8. (367 aa)
	ENSSGRP00000040922	annotation not available (65 aa)
	lin28a	Protein lin-28 homolog A. (213 aa)
	LOC107558755	Sal-like protein 4. (1089 aa)
	LOC107565801	Probable E3 ubiquitin-protein ligase TRIM8. (564 aa)
	ENSSGRP00000046009	Fez family zinc finger protein 2. (444 aa)
	LOC107571959	U6 snRNA-associated Sm-like protein LSm1. (165 aa)
	LOC107566537	B-cell CLL/lymphoma 9 protein-like isoform X1. (1577 aa)
	ENSSGRP00000049462	Exosome complex exonuclease RRP44 homolog A-like isoform X1. (951 aa)
	ENSSGRP00000049464	DIS3-like exonuclease 2. (107 aa)
	LOC107569923	Vacuolar protein sorting-associated protein 72 homolog. (409 aa)
	LOC107602667	Structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6). (1218 aa)
	LOC107553014	RNA polymerase-associated protein CTR9 homolog. (1159 aa)
	LOC107588567	RNA polymerase-associated protein RTF1 homolog. (678 aa)
	LOC107560971	Piwi-like protein 2. (1090 aa)
	LOC107584417	Eukaryotic translation initiation factor 4E transporter-like. (832 aa)
	ENSSGRP00000060416	annotation not available (107 aa)
	EIF4ENIF1	Eukaryotic translation initiation factor 4E transporter-like. (940 aa)
	LOC107571545	Cadherin 2, type 1, N-cadherin. (966 aa)
	ENSSGRP00000063258	annotation not available (175 aa)
	ENSSGRP00000067026	Vacuolar protein sorting 72 homolog a. (331 aa)
	Rif1	Telomere-associated protein RIF1. (2189 aa)
	LOC107579532	Failed axon connections homolog. (404 aa)
	ENSSGRP00000068480	Mediator of RNA polymerase II transcription subunit 14-like. (1417 aa)
	LOC107603052	B-cell CLL/lymphoma 9 protein-like. (1575 aa)
	ENSSGRP00000071108	T-cell acute lymphocytic leukemia 1. (324 aa)
	LOC107584458	Fanconi anemia group D2 protein-like. (1367 aa)
	rtf1	RNA polymerase-associated protein RTF1 homolog isoform X1. (716 aa)
	ENSSGRP00000080416	Tripartite motif containing 8a. (268 aa)
	ENSSGRP00000080417	annotation not available (84 aa)
	LOC107595624	Zinc fingers and homeoboxes protein 2-like. (805 aa)
	LOC107587769	Failed axon connections homolog isoform X1. (410 aa)
	LOC107595277	N6-adenosine-methyltransferase subunit METTL3. (587 aa)
	LOC107597566	Mediator of RNA polymerase II transcription subunit 14-like. (1303 aa)
	ENSSGRP00000085966	Methyltransferase like 14. (379 aa)
	LOC107568336	Cadherin 2, type 1, N-cadherin. (908 aa)
	LOC107602842	Fanconi anemia group C protein-like isoform X1. (603 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4ENIF1	ENSSGRP00000067026	ENSSGRP00000061032	ENSSGRP00000067026	Eukaryotic translation initiation factor 4E transporter-like.	Vacuolar protein sorting 72 homolog a.	0.415
EIF4ENIF1	ENSSGRP00000091163	ENSSGRP00000061032	ENSSGRP00000091163	Eukaryotic translation initiation factor 4E transporter-like.	Vacuolar protein sorting 72 homolog b.	0.415
EIF4ENIF1	ENSSGRP00000096558	ENSSGRP00000061032	ENSSGRP00000096558	Eukaryotic translation initiation factor 4E transporter-like.	Parafibromin-like.	0.440
EIF4ENIF1	LOC107548281	ENSSGRP00000061032	ENSSGRP00000107341	Eukaryotic translation initiation factor 4E transporter-like.	U6 snRNA-associated Sm-like protein LSm1.	0.466
EIF4ENIF1	LOC107569923	ENSSGRP00000061032	ENSSGRP00000051246	Eukaryotic translation initiation factor 4E transporter-like.	Vacuolar protein sorting-associated protein 72 homolog.	0.415
EIF4ENIF1	LOC107571959	ENSSGRP00000061032	ENSSGRP00000047369	Eukaryotic translation initiation factor 4E transporter-like.	U6 snRNA-associated Sm-like protein LSm1.	0.466
EIF4ENIF1	LOC107588567	ENSSGRP00000061032	ENSSGRP00000057106	Eukaryotic translation initiation factor 4E transporter-like.	RNA polymerase-associated protein RTF1 homolog.	0.588
EIF4ENIF1	LOC107593758	ENSSGRP00000061032	ENSSGRP00000107347	Eukaryotic translation initiation factor 4E transporter-like.	Parafibromin.	0.440
EIF4ENIF1	rtf1	ENSSGRP00000061032	ENSSGRP00000072037	Eukaryotic translation initiation factor 4E transporter-like.	RNA polymerase-associated protein RTF1 homolog isoform X1.	0.588
EIF4ENIF1	vps72	ENSSGRP00000061032	ENSSGRP00000011775	Eukaryotic translation initiation factor 4E transporter-like.	Vacuolar protein sorting-associated protein 72 homolog.	0.415
ENSSGRP00000011297	ENSSGRP00000063258	ENSSGRP00000011297	ENSSGRP00000063258	annotation not available	annotation not available	0.490
ENSSGRP00000013721	ENSSGRP00000110983	ENSSGRP00000013721	ENSSGRP00000110983	Nanos homolog 2.	Sal-like protein 4.	0.462
ENSSGRP00000013721	LOC107558755	ENSSGRP00000013721	ENSSGRP00000044343	Nanos homolog 2.	Sal-like protein 4.	0.462
ENSSGRP00000013721	LOC107560971	ENSSGRP00000013721	ENSSGRP00000058678	Nanos homolog 2.	Piwi-like protein 2.	0.649
ENSSGRP00000013721	LOC107561271	ENSSGRP00000013721	ENSSGRP00000001374	Nanos homolog 2.	Piwi-like protein 2.	0.649
ENSSGRP00000013721	lin28a	ENSSGRP00000013721	ENSSGRP00000043054	Nanos homolog 2.	Protein lin-28 homolog A.	0.496
ENSSGRP00000013735	ENSSGRP00000063258	ENSSGRP00000013735	ENSSGRP00000063258	Fibroblast growth factor 4.	annotation not available	0.490
ENSSGRP00000013737	ENSSGRP00000063258	ENSSGRP00000013737	ENSSGRP00000063258	Fibroblast growth factor 4.	annotation not available	0.490
ENSSGRP00000017277	ENSSGRP00000018162	ENSSGRP00000017277	ENSSGRP00000018162	PR domain zinc finger protein 14-like.	Protein lin-28 homolog A isoform X1.	0.523
ENSSGRP00000017277	ENSSGRP00000063258	ENSSGRP00000017277	ENSSGRP00000063258	PR domain zinc finger protein 14-like.	annotation not available	0.852