(55 nodes) Desmosome network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107562513	Junction plakoglobin-like. (727 aa)
	ENSSGRP00000001549	Kazrin, periplakin interacting protein a. (459 aa)
	ENSSGRP00000004794	LOW QUALITY PROTEIN: vinculin-like. (67 aa)
	LOC107559177	Plakophilin-1-like. (582 aa)
	ENSSGRP00000006060	annotation not available (115 aa)
	ENSSGRP00000006174	Kelch-like protein 24/35. (106 aa)
	ENSSGRP00000007901	Junctional adhesion molecule C-like. (216 aa)
	ENSSGRP00000008785	B-cadherin-like. (882 aa)
	ENSSGRP00000009438	annotation not available (126 aa)
	LOC107552129	Kelch-like protein 20. (621 aa)
	LOC107601794	Vinculin-like. (1077 aa)
	LOC107559724	Desmoglein-3-like. (1156 aa)
	ENSSGRP00000014375	annotation not available (873 aa)
	ENSSGRP00000014874	Desmocollin-2-like. (817 aa)
	ENSSGRP00000021779	Kelch-like protein 24/35. (563 aa)
	LOC107586091	LOW QUALITY PROTEIN: plakophilin-2-like. (809 aa)
	ENSSGRP00000044019	Vinculin b. (1088 aa)
	LOC107587587	Plakophilin-1-like. (778 aa)
	ENSSGRP00000049665	Vinculin-like. (1099 aa)
	ENSSGRP00000051526	Kazrin-like. (561 aa)
	ENSSGRP00000051527	annotation not available (181 aa)
	LOC107557698	Plakophilin-3-like. (734 aa)
	ENSSGRP00000056919	Kazrin, periplakin interacting protein a. (459 aa)
	ENSSGRP00000056923	Kazrin-A. (222 aa)
	ENSSGRP00000057234	Si:ch211-256e16.3. (514 aa)
	LOC107562072	Junction plakoglobin-like isoform X1. (741 aa)
	LOC107591321	Kelch-like protein 6. (614 aa)
	ENSSGRP00000062802	annotation not available (45 aa)
	LOC107589947	Plakophilin-2-like isoform X1. (807 aa)
	LOC107553058	Plakophilin-3-like. (781 aa)
	ENSSGRP00000069703	LOW QUALITY PROTEIN: vinculin-like. (1072 aa)
	ENSSGRP00000069704	annotation not available (68 aa)
	LOC107558769	Kelch-like protein 6. (576 aa)
	LOC107590230	Kelch-like protein 24/35. (601 aa)
	ENSSGRP00000077260	Plakophilin-3-like. (728 aa)
	ENSSGRP00000085770	Junctional adhesion molecule C-like. (273 aa)
	LOC107557851	Kelch-like protein 24/35. (432 aa)
	LOC107561060	Junctional adhesion molecule C-like isoform X1. (314 aa)
	LOC107600063	Kelch-like protein 24/35. (599 aa)
	pof1b	POF1B actin binding protein. (355 aa)
	LOC107589311	Plakophilin-3-like isoform X1. (871 aa)
	ENSSGRP00000097631	Desmoglein-2-like. (782 aa)
	LOC107598134	Catenin delta-2-like. (413 aa)
	ENSSGRP00000098963	Plakophilin-1-like. (572 aa)
	LOC107563614	Junction plakoglobin-like. (382 aa)
	LOC107548190	Junctional adhesion molecule C-like. (312 aa)
	LOC107586617	Pinin-like. (671 aa)
	ENSSGRP00000105239	Junction plakoglobin b. (711 aa)
	LOC107586738	Kelch-like protein 24/35. (600 aa)
	ENSSGRP00000108081	annotation not available (220 aa)
	ENSSGRP00000108083	Kazrin-like. (517 aa)
	LOC107587207	Protein POF1B-like isoform X1. (566 aa)
	LOC107588868	Desmocollin-2-like. (912 aa)
	ENSSGRP00000109917	Desmoglein-2-like. (713 aa)
	ENSSGRP00000109920	Si:ch73-74h11.1. (1010 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000004794	ENSSGRP00000077260	ENSSGRP00000004794	ENSSGRP00000077260	LOW QUALITY PROTEIN: vinculin-like.	Plakophilin-3-like.	0.429
ENSSGRP00000004794	ENSSGRP00000098963	ENSSGRP00000004794	ENSSGRP00000098963	LOW QUALITY PROTEIN: vinculin-like.	Plakophilin-1-like.	0.429
ENSSGRP00000004794	ENSSGRP00000105239	ENSSGRP00000004794	ENSSGRP00000105239	LOW QUALITY PROTEIN: vinculin-like.	Junction plakoglobin b.	0.646
ENSSGRP00000004794	LOC107553058	ENSSGRP00000004794	ENSSGRP00000068667	LOW QUALITY PROTEIN: vinculin-like.	Plakophilin-3-like.	0.429
ENSSGRP00000004794	LOC107557698	ENSSGRP00000004794	ENSSGRP00000056068	LOW QUALITY PROTEIN: vinculin-like.	Plakophilin-3-like.	0.429
ENSSGRP00000004794	LOC107559177	ENSSGRP00000004794	ENSSGRP00000005755	LOW QUALITY PROTEIN: vinculin-like.	Plakophilin-1-like.	0.429
ENSSGRP00000004794	LOC107562072	ENSSGRP00000004794	ENSSGRP00000061949	LOW QUALITY PROTEIN: vinculin-like.	Junction plakoglobin-like isoform X1.	0.680
ENSSGRP00000004794	LOC107562513	ENSSGRP00000004794	ENSSGRP00000034335	LOW QUALITY PROTEIN: vinculin-like.	Junction plakoglobin-like.	0.646
ENSSGRP00000004794	LOC107563614	ENSSGRP00000004794	ENSSGRP00000101853	LOW QUALITY PROTEIN: vinculin-like.	Junction plakoglobin-like.	0.680
ENSSGRP00000004794	LOC107586091	ENSSGRP00000004794	ENSSGRP00000042858	LOW QUALITY PROTEIN: vinculin-like.	LOW QUALITY PROTEIN: plakophilin-2-like.	0.429
ENSSGRP00000004794	LOC107587587	ENSSGRP00000004794	ENSSGRP00000045753	LOW QUALITY PROTEIN: vinculin-like.	Plakophilin-1-like.	0.429
ENSSGRP00000004794	LOC107589311	ENSSGRP00000004794	ENSSGRP00000095147	LOW QUALITY PROTEIN: vinculin-like.	Plakophilin-3-like isoform X1.	0.429
ENSSGRP00000004794	LOC107589947	ENSSGRP00000004794	ENSSGRP00000064213	LOW QUALITY PROTEIN: vinculin-like.	Plakophilin-2-like isoform X1.	0.429
ENSSGRP00000004794	LOC107598134	ENSSGRP00000004794	ENSSGRP00000097957	LOW QUALITY PROTEIN: vinculin-like.	Catenin delta-2-like.	0.429
ENSSGRP00000006060	ENSSGRP00000077260	ENSSGRP00000006060	ENSSGRP00000077260	annotation not available	Plakophilin-3-like.	0.429
ENSSGRP00000006060	ENSSGRP00000098963	ENSSGRP00000006060	ENSSGRP00000098963	annotation not available	Plakophilin-1-like.	0.429
ENSSGRP00000006060	ENSSGRP00000105239	ENSSGRP00000006060	ENSSGRP00000105239	annotation not available	Junction plakoglobin b.	0.646
ENSSGRP00000006060	LOC107553058	ENSSGRP00000006060	ENSSGRP00000068667	annotation not available	Plakophilin-3-like.	0.429
ENSSGRP00000006060	LOC107557698	ENSSGRP00000006060	ENSSGRP00000056068	annotation not available	Plakophilin-3-like.	0.429
ENSSGRP00000006060	LOC107559177	ENSSGRP00000006060	ENSSGRP00000005755	annotation not available	Plakophilin-1-like.	0.429