(113 nodes) Structural constituent of chromatin network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000065954	annotation not available (94 aa)
	ENSSGRP00000019778	annotation not available (109 aa)
	ENSSGRP00000019786	annotation not available (92 aa)
	ENSSGRP00000019814	Histone H2A-like isoform X1. (130 aa)
	ENSSGRP00000022136	annotation not available (109 aa)
	ENSSGRP00000022137	Histone H2A-like. (127 aa)
	LOC107595002	Histone H1-like. (205 aa)
	ENSSGRP00000024842	Heterochromatin protein 1-binding protein 3-like. (606 aa)
	LOC107554735	Late histone H2B.L4 isoform X1. (117 aa)
	LOC107599302	Histone chaperone asf1b-A. (197 aa)
	ENSSGRP00000026127	annotation not available (123 aa)
	ENSSGRP00000026558	Histone H2B 3. (123 aa)
	ENSSGRP00000026564	annotation not available (137 aa)
	ENSSGRP00000026746	annotation not available (95 aa)
	ENSSGRP00000026761	Histone H2B-like. (224 aa)
	ENSSGRP00000026762	annotation not available (65 aa)
	ENSSGRP00000027028	Histone H1-like. (207 aa)
	ENSSGRP00000027029	annotation not available (94 aa)
	ENSSGRP00000027242	Histone H2AX. (132 aa)
	ENSSGRP00000027848	annotation not available (98 aa)
	LOC107560346	Protein B4-like. (243 aa)
	ENSSGRP00000028742	annotation not available (133 aa)
	ENSSGRP00000028754	annotation not available (96 aa)
	LOC107588951	Histone H2A.Z. (128 aa)
	LOC107548474-2	Histone H3.3. (136 aa)
	LOC107565247	Histone H3-like centromeric protein A. (145 aa)
	LOC107569771	Cx9C motif-containing protein 4-like. (66 aa)
	LOC107589552	Core histone macro-H2A.2. (368 aa)
	LOC107564177	Histone H2B-like. (124 aa)
	ENSSGRP00000042419	annotation not available (183 aa)
	LOC107564153	Histone H2A-like. (128 aa)
	ENSSGRP00000042443	annotation not available (180 aa)
	LOC107556640	Histone H3.3-like. (103 aa)
	ENSSGRP00000043186	Histone H1.0-like. (202 aa)
	ENSSGRP00000047969	H2A.X variant histone family member 1. (141 aa)
	LOC107602710	Histone chaperone asf1b-A-like. (197 aa)
	LOC107584441	Histone H1x-like. (200 aa)
	LOC107548474-3	Histone H3.3. (136 aa)
	LOC107568179	Histone H1x-like. (204 aa)
	ENSSGRP00000012799	annotation not available (85 aa)
	ENSSGRP00000019736	annotation not available (137 aa)
	LOC107569592-2	Histone H2A-like. (128 aa)
	ENSSGRP00000019710	annotation not available (107 aa)
	ENSSGRP00000019618	annotation not available (93 aa)
	ENSSGRP00000019607	annotation not available (138 aa)
	ENSSGRP00000019579	annotation not available (147 aa)
	ENSSGRP00000019083	annotation not available (109 aa)
	H3-2	H3.2 histone (putative). (101 aa)
	LOC107570071	Late histone H2A.2.2-like. (142 aa)
	LOC107573603	Histone chaperone asf1b-B. (197 aa)
	LOC107575987	Histone H2B-like. (124 aa)
	LOC107574860	Histone H2A-like. (128 aa)
	ENSSGRP00000017502	annotation not available (138 aa)
	ENSSGRP00000017460	annotation not available (134 aa)
	LOC107575878	Histone H2A-like. (128 aa)
	ENSSGRP00000016018	H2A.X variant histone. (131 aa)
	ENSSGRP00000016017	H2A.X variant histone. (131 aa)
	LOC107569326	Histone H2A-like. (128 aa)
	ENSSGRP00000012765	Core histone macro-H2A.2-like. (265 aa)
	LOC107554213	Histone H1.0-like. (200 aa)
	LOC107548474	Histone H3.3-like. (136 aa)
	ENSSGRP00000009665	BTB (POZ) domain containing 11a. (1007 aa)
	ENSSGRP00000009249	annotation not available (114 aa)
	LOC107575135	Histone H1-like. (206 aa)
	LOC107575134-2	Histone H2A-like. (128 aa)
	LOC107569592	Histone H2A-like. (128 aa)
	ENSSGRP00000007788	annotation not available (126 aa)
	LOC107575923-4	Histone H2A-like. (128 aa)
	LOC107575923-3	Histone H2A-like. (128 aa)
	ENSSGRP00000007138	annotation not available (93 aa)
	ENSSGRP00000007128	annotation not available (138 aa)
	LOC107575923-2	Histone H2A-like. (128 aa)
	ENSSGRP00000007070	annotation not available (93 aa)
	ENSSGRP00000007060	Histone H3. (138 aa)
	LOC107580262	Histone H1.4-like. (173 aa)
	LOC107555719-3	Histone H4. (103 aa)
	ENSSGRP00000005851	annotation not available (82 aa)
	LOC107555719-2	Histone H4. (103 aa)
	LOC107569589	Histone H2B. (124 aa)
	ENSSGRP00000006327	annotation not available (88 aa)
	ENSSGRP00000006318	annotation not available (109 aa)
	LOC107581013	Histone H2B-like. (124 aa)
	LOC107569589-2	Histone H2B. (124 aa)
	LOC107548474-5	Histone H3.3. (136 aa)
	LOC107548474-4	Histone H3.3. (136 aa)
	ENSSGRP00000065210	annotation not available (160 aa)
	ENSSGRP00000005083	Histone H2B. (151 aa)
	ENSSGRP00000004951	annotation not available (94 aa)
	LOC107575923	Histone H2A-like. (128 aa)
	LOC107555719	Histone H4-like. (103 aa)
	LOC107575134	Histone H2A-like. (128 aa)
	ENSSGRP00000003037	Histone H3.3-like. (131 aa)
	ENSSGRP00000002619	annotation not available (93 aa)
	ENSSGRP00000002615	annotation not available (101 aa)
	ENSSGRP00000002316	annotation not available (93 aa)
	ENSSGRP00000002243	annotation not available (101 aa)
	ENSSGRP00000000751	Histone H1-like. (130 aa)
	ENSSGRP00000000750	annotation not available (98 aa)
	ENSSGRP00000063776	Protein B4-like. (233 aa)
	LOC107563210	Histone H3-like centromeric protein A. (147 aa)
	ENSSGRP00000074317	Histone chaperone asf1b-B-like. (195 aa)
	LOC107569326-2	Histone H2A-like. (128 aa)
	ENSSGRP00000075350	annotation not available (134 aa)
	ENSSGRP00000075362	Histone H2A-like. (134 aa)
	ENSSGRP00000075366	annotation not available (93 aa)
	ENSSGRP00000079110	annotation not available (124 aa)
	LOC107550237	Histone H3.3-like. (145 aa)
	ENSSGRP00000080101	annotation not available (102 aa)
	ENSSGRP00000082318	Core histone macro-H2A.1. (159 aa)
	ENSSGRP00000082605	C-x(9)-C motif containing 4 homolog (S. cerevisiae). (68 aa)
	LOC107599604	Histone H2A.V isoform X1. (134 aa)
	ENSSGRP00000102912	annotation not available (138 aa)
	ENSSGRP00000019745	Histone H3-like. (126 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000750	ENSSGRP00000000751	ENSSGRP00000000750	ENSSGRP00000000751	annotation not available	Histone H1-like.	0.505
ENSSGRP00000000750	ENSSGRP00000002243	ENSSGRP00000000750	ENSSGRP00000002243	annotation not available	annotation not available	0.670
ENSSGRP00000000750	ENSSGRP00000002615	ENSSGRP00000000750	ENSSGRP00000002615	annotation not available	annotation not available	0.670
ENSSGRP00000000750	ENSSGRP00000003037	ENSSGRP00000000750	ENSSGRP00000003037	annotation not available	Histone H3.3-like.	0.670
ENSSGRP00000000750	ENSSGRP00000005083	ENSSGRP00000000750	ENSSGRP00000005083	annotation not available	Histone H2B.	0.745
ENSSGRP00000000750	ENSSGRP00000005851	ENSSGRP00000000750	ENSSGRP00000005851	annotation not available	annotation not available	0.809
ENSSGRP00000000750	ENSSGRP00000006318	ENSSGRP00000000750	ENSSGRP00000006318	annotation not available	annotation not available	0.745
ENSSGRP00000000750	ENSSGRP00000007060	ENSSGRP00000000750	ENSSGRP00000007060	annotation not available	Histone H3.	0.670
ENSSGRP00000000750	ENSSGRP00000007128	ENSSGRP00000000750	ENSSGRP00000007128	annotation not available	annotation not available	0.670
ENSSGRP00000000750	ENSSGRP00000007788	ENSSGRP00000000750	ENSSGRP00000007788	annotation not available	annotation not available	0.670
ENSSGRP00000000750	ENSSGRP00000009249	ENSSGRP00000000750	ENSSGRP00000009249	annotation not available	annotation not available	0.670
ENSSGRP00000000750	ENSSGRP00000012765	ENSSGRP00000000750	ENSSGRP00000012765	annotation not available	Core histone macro-H2A.2-like.	0.825
ENSSGRP00000000750	ENSSGRP00000012799	ENSSGRP00000000750	ENSSGRP00000012799	annotation not available	annotation not available	0.798
ENSSGRP00000000750	ENSSGRP00000016017	ENSSGRP00000000750	ENSSGRP00000016017	annotation not available	H2A.X variant histone.	0.687
ENSSGRP00000000750	ENSSGRP00000016018	ENSSGRP00000000750	ENSSGRP00000016018	annotation not available	H2A.X variant histone.	0.687
ENSSGRP00000000750	ENSSGRP00000017460	ENSSGRP00000000750	ENSSGRP00000017460	annotation not available	annotation not available	0.687
ENSSGRP00000000750	ENSSGRP00000017502	ENSSGRP00000000750	ENSSGRP00000017502	annotation not available	annotation not available	0.687
ENSSGRP00000000750	ENSSGRP00000019083	ENSSGRP00000000750	ENSSGRP00000019083	annotation not available	annotation not available	0.745
ENSSGRP00000000750	ENSSGRP00000019579	ENSSGRP00000000750	ENSSGRP00000019579	annotation not available	annotation not available	0.687
ENSSGRP00000000750	ENSSGRP00000019607	ENSSGRP00000000750	ENSSGRP00000019607	annotation not available	annotation not available	0.670