(15 nodes) U2 snRNA binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000099144	Uncharacterized protein LOC107562890 isoform X1. (207 aa)
	ENSSGRP00000010252	Ro60, Y RNA binding protein. (333 aa)
	ENSSGRP00000010424	Splicing factor 3B subunit 3-like. (332 aa)
	LRMDA	Leucine rich melanocyte differentiation associated. (179 aa)
	Snrpa1	U2 small nuclear ribonucleoprotein A. (98 aa)
	Sf3b3	Splicing factor 3B subunit 3. (1164 aa)
	ENSSGRP00000059242	annotation not available (71 aa)
	ENSSGRP00000059243	annotation not available (106 aa)
	ENSSGRP00000059245	Splicing factor 3b, subunit 3. (407 aa)
	ENSSGRP00000060523	Leucine-rich repeat-containing protein 51-like isoform X1. (181 aa)
	LOC107548576	Pre-mRNA-processing-splicing factor 8-like isoform X1. (2342 aa)
	ENSSGRP00000080948	pre-mRNA processing factor 8. (2322 aa)
	ENSSGRP00000091349	Leucine rich melanocyte differentiation associated. (222 aa)
	ENSSGRP00000106492	Coilin-like. (542 aa)
	ro60	60 kDa SS-A/Ro ribonucleoprotein. (213 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000010252	ro60	ENSSGRP00000010252	ENSSGRP00000107197	Ro60, Y RNA binding protein.	60 kDa SS-A/Ro ribonucleoprotein.	0.521
ENSSGRP00000010424	ENSSGRP00000059243	ENSSGRP00000010424	ENSSGRP00000059243	Splicing factor 3B subunit 3-like.	annotation not available	0.419
ENSSGRP00000010424	ENSSGRP00000060523	ENSSGRP00000010424	ENSSGRP00000060523	Splicing factor 3B subunit 3-like.	Leucine-rich repeat-containing protein 51-like isoform X1.	0.803
ENSSGRP00000010424	ENSSGRP00000080948	ENSSGRP00000010424	ENSSGRP00000080948	Splicing factor 3B subunit 3-like.	pre-mRNA processing factor 8.	0.947
ENSSGRP00000010424	ENSSGRP00000091349	ENSSGRP00000010424	ENSSGRP00000091349	Splicing factor 3B subunit 3-like.	Leucine rich melanocyte differentiation associated.	0.803
ENSSGRP00000010424	ENSSGRP00000099144	ENSSGRP00000010424	ENSSGRP00000099144	Splicing factor 3B subunit 3-like.	Uncharacterized protein LOC107562890 isoform X1.	0.953
ENSSGRP00000010424	LOC107548576	ENSSGRP00000010424	ENSSGRP00000064131	Splicing factor 3B subunit 3-like.	Pre-mRNA-processing-splicing factor 8-like isoform X1.	0.947
ENSSGRP00000010424	LRMDA	ENSSGRP00000010424	ENSSGRP00000020096	Splicing factor 3B subunit 3-like.	Leucine rich melanocyte differentiation associated.	0.803
ENSSGRP00000010424	Snrpa1	ENSSGRP00000010424	ENSSGRP00000028364	Splicing factor 3B subunit 3-like.	U2 small nuclear ribonucleoprotein A.	0.953
ENSSGRP00000059242	ENSSGRP00000059243	ENSSGRP00000059242	ENSSGRP00000059243	annotation not available	annotation not available	0.496
ENSSGRP00000059242	ENSSGRP00000060523	ENSSGRP00000059242	ENSSGRP00000060523	annotation not available	Leucine-rich repeat-containing protein 51-like isoform X1.	0.803
ENSSGRP00000059242	ENSSGRP00000080948	ENSSGRP00000059242	ENSSGRP00000080948	annotation not available	pre-mRNA processing factor 8.	0.947
ENSSGRP00000059242	ENSSGRP00000091349	ENSSGRP00000059242	ENSSGRP00000091349	annotation not available	Leucine rich melanocyte differentiation associated.	0.803
ENSSGRP00000059242	ENSSGRP00000099144	ENSSGRP00000059242	ENSSGRP00000099144	annotation not available	Uncharacterized protein LOC107562890 isoform X1.	0.953
ENSSGRP00000059242	LOC107548576	ENSSGRP00000059242	ENSSGRP00000064131	annotation not available	Pre-mRNA-processing-splicing factor 8-like isoform X1.	0.947
ENSSGRP00000059242	LRMDA	ENSSGRP00000059242	ENSSGRP00000020096	annotation not available	Leucine rich melanocyte differentiation associated.	0.803
ENSSGRP00000059242	Snrpa1	ENSSGRP00000059242	ENSSGRP00000028364	annotation not available	U2 small nuclear ribonucleoprotein A.	0.953
ENSSGRP00000059243	ENSSGRP00000010424	ENSSGRP00000059243	ENSSGRP00000010424	annotation not available	Splicing factor 3B subunit 3-like.	0.419
ENSSGRP00000059243	ENSSGRP00000059242	ENSSGRP00000059243	ENSSGRP00000059242	annotation not available	annotation not available	0.496
ENSSGRP00000059243	ENSSGRP00000059245	ENSSGRP00000059243	ENSSGRP00000059245	annotation not available	Splicing factor 3b, subunit 3.	0.403