(118 nodes) Preribosome network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	wdr46	U3 small nucleolar RNA-associated protein 7. (437 aa)
	ENSSGRP00000006700	annotation not available (365 aa)
	ENSSGRP00000006101	annotation not available (231 aa)
	ENSSGRP00000005603	Eukaryotic translation initiation factor 6-like. (264 aa)
	bop1	Ribosome biogenesis protein BOP1. (769 aa)
	noc2l	Nucleolar complex protein 2 homolog. (756 aa)
	ENSSGRP00000003574	WD repeat-containing protein 74-like. (201 aa)
	ENSSGRP00000002529	annotation not available (107 aa)
	ENSSGRP00000002527	annotation not available (384 aa)
	LOC107584214	Ribosomal L1 domain-containing protein 1-like. (360 aa)
	ENSSGRP00000008371	NOC2-like nucleolar associated transcriptional repressor. (510 aa)
	ENSSGRP00000009028	annotation not available (293 aa)
	ENSSGRP00000011548	BOP1 ribosomal biogenesis factor. (458 aa)
	LOC107592227	RRNA 2'-O-methyltransferase fibrillarin-like. (312 aa)
	ENSSGRP00000013069	UTP3 small subunit processome component. (440 aa)
	ENSSGRP00000015598	WD repeat domain 36. (656 aa)
	ENSSGRP00000017321	U3 small nucleolar ribonucleoprotein protein LCP5. (332 aa)
	Pdcd11	RRNA biogenesis protein RRP5. (914 aa)
	riok3	Serine/threonine-protein kinase RIO3. (507 aa)
	LOC107572361	Essential nuclear protein 1. (385 aa)
	rrp9	U3 small nucleolar RNA-interacting protein 2 isoform X1. (471 aa)
	LOC107595005	U3 small nucleolar ribonucleoprotein protein IMP4-like. (291 aa)
	ENSSGRP00000026240	annotation not available (105 aa)
	ENSSGRP00000028008	NOP14 nucleolar protein homolog (yeast). (555 aa)
	ENSSGRP00000028750	annotation not available (460 aa)
	Ftsj3	AdoMet-dependent rRNA methyltransferase SPB1. (605 aa)
	LOC107577711	Hormonally up-regulated neu tumor-associated kinase homolog A-like. (664 aa)
	ENSSGRP00000031192	Nucleolar protein 56-like isoform X1. (541 aa)
	ENSSGRP00000031624	UTP6 small subunit processome component. (552 aa)
	ENSSGRP00000033381	RRNA 2'-O-methyltransferase fibrillarin-like. (337 aa)
	ENSSGRP00000034240	BMS1 ribosome biogenesis factor. (1122 aa)
	ENSSGRP00000034657	Nucleolar protein 6 (RNA-associated). (821 aa)
	ENSSGRP00000035354	KRI1 homolog. (716 aa)
	NOP14	Nucleolar protein 14. (797 aa)
	ENSSGRP00000038627	Nucleolar protein 6 (RNA-associated). (767 aa)
	LOC107569751	Essential nuclear protein 1. (425 aa)
	ENSSGRP00000040247	annotation not available (59 aa)
	utp18	U3 small nucleolar RNA-associated protein 18 homolog. (510 aa)
	RPF1	Ribosome production factor 1. (353 aa)
	LOC107584285	Serum response factor-binding protein 1-like isoform X1. (722 aa)
	ENSSGRP00000042428	annotation not available (110 aa)
	ENSSGRP00000042739	U3 small nucleolar RNA-associated protein 21. (745 aa)
	LOC107566970	Protein MAK16 homolog. (296 aa)
	ENSSGRP00000043667	U3 small nucleolar RNA-associated protein 7. (428 aa)
	ENSSGRP00000044215	U3 small nucleolar RNA-associated protein 19. (439 aa)
	ENSSGRP00000044344	RRP15-like protein isoform X1. (251 aa)
	ENSSGRP00000046341	annotation not available (55 aa)
	ENSSGRP00000047930	Ribosomal RNA processing 7 homolog A. (271 aa)
	LOC107599372	Ribosome biogenesis protein NSA2 homolog. (260 aa)
	LOC107595077	U3 small nucleolar ribonucleoprotein protein MPP10-like. (689 aa)
	ltv1	Protein LTV1 homolog isoform X1. (469 aa)
	LOC107549111	Small subunit ribosomal protein S7e. (217 aa)
	emg1	RRNA small subunit pseudouridine methyltransferase Nep1. (238 aa)
	LOC107588971	Hormonally up-regulated neu tumor-associated kinase homolog A-like. (693 aa)
	LOC107590198	Ribosome biogenesis regulatory protein homolog. (344 aa)
	ENSSGRP00000058456	U3 small nucleolar RNA-associated protein 10. (1425 aa)
	nop58	Nucleolar protein 58 isoform X1. (548 aa)
	ENSSGRP00000060258	Ribosome biogenesis protein wdr12-like. (426 aa)
	ENSSGRP00000060390	UTP23 small subunit processome component. (251 aa)
	ENSSGRP00000061315	LOW QUALITY PROTEIN: periodic tryptophan protein 2 homolog. (925 aa)
	ENSSGRP00000063011	EMG1 N1-specific pseudouridine methyltransferase. (131 aa)
	ENSSGRP00000063013	EMG1 N1-specific pseudouridine methyltransferase. (201 aa)
	tbl3	U3 small nucleolar RNA-associated protein 13. (915 aa)
	ENSSGRP00000064203	60S ribosome subunit biogenesis protein NIP7 homolog. (129 aa)
	utp25	U3 small nucleolar RNA-associated protein 25. (744 aa)
	ENSSGRP00000066233	annotation not available (682 aa)
	LOC107553989	U3 small nucleolar RNA-associated protein 4 homolog. (685 aa)
	nip7	60S ribosome subunit biogenesis protein NIP7 homolog. (180 aa)
	LOC107554037	Ribosomal L1 domain-containing protein 1-like. (368 aa)
	ENSSGRP00000071420	WD repeat domain 3. (833 aa)
	LOC107585992	U3 small nucleolar ribonucleoprotein protein MPP10-like isoform X1. (684 aa)
	LOC107568248	Protein KRI1 homolog isoform X1. (770 aa)
	ENSSGRP00000074775	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (251 aa)
	LOC107555140	WD repeat-containing protein 74-like. (384 aa)
	tmem169	X-ray repair cross-complementing protein 5-like. (724 aa)
	ENSSGRP00000076966	Pescadillo. (495 aa)
	utp6	U3 small nucleolar RNA-associated protein 6 homolog isoform X1. (597 aa)
	utp11	Probable U3 small nucleolar RNA-associated protein 11. (252 aa)
	LOC107572823	Pancreatic secretory granule membrane major glycoprotein GP2-like. (390 aa)
	LOC107583899	U3 small nucleolar RNA-associated protein 4 homolog. (630 aa)
	ENSSGRP00000084572	Ribosome biogenesis protein ENP2. (656 aa)
	ENSSGRP00000085426	FCF1 rRNA-processing protein. (175 aa)
	ENSSGRP00000085722	Ribosome biogenesis protein ENP2. (576 aa)
	MAK16	Protein MAK16 homolog. (298 aa)
	pes1	Pescadillo homolog. (577 aa)
	utp23	U3 small nucleolar RNA-associated protein 23. (253 aa)
	ENSSGRP00000089012	Ribosomal RNA processing 1. (602 aa)
	LOC107585596	Pre-rRNA-processing protein TSR1 homolog. (835 aa)
	ENSSGRP00000090606	U3 small nucleolar ribonucleoprotein protein IMP4-like. (305 aa)
	ENSSGRP00000091174	MRNA turnover protein 4 homolog. (266 aa)
	Heatr1	U3 small nucleolar RNA-associated protein 10. (2153 aa)
	LOC107585652	Ribosome biogenesis protein NSA2 homolog. (242 aa)
	Bms1	Ribosome biogenesis protein BMS1 homolog. (1231 aa)
	ENSSGRP00000095040	Nucleolar protein 56-like. (496 aa)
	Prkdc	DNA-dependent protein kinase catalytic subunit isoform X1. (3945 aa)
	ENSSGRP00000096227	Ddb1 and cul4 associated factor 13. (351 aa)
	ENSSGRP00000096240	Ddb1 and cul4 associated factor 13. (165 aa)
	ENSSGRP00000096415	RIO kinase 3 (yeast). (333 aa)
	RRP7A	Putative ribosomal RNA-processing protein 7 homolog B. (143 aa)
	LOC107588835	Periodic tryptophan protein 2 homolog. (987 aa)
	ENSSGRP00000100769	Ribosome production factor 1-like. (366 aa)
	LOC107548794	U3 small nucleolar RNA-associated protein 19. (537 aa)
	LOC107562881	Serum response factor-binding protein 1-like. (707 aa)
	eif6	Eukaryotic translation initiation factor 6. (245 aa)
	ENSSGRP00000102036	WD repeat domain 3. (925 aa)
	ENSSGRP00000102711	Serine/threonine-protein kinase RIO1-like. (544 aa)
	ENSSGRP00000102732	Matrix metallopeptidase 15a. (234 aa)
	rrs1	Ribosome biogenesis regulatory protein homolog. (357 aa)
	dcaf13	DDB1- and CUL4-associated factor 13. (445 aa)
	LOC107592627	Pre-rRNA-processing protein TSR1 homolog isoform X1. (837 aa)
	LOC107581420	Ribosome biogenesis protein wdr12-like. (405 aa)
	ENSSGRP00000107996	annotation not available (65 aa)
	ENSSGRP00000108372	U3 small nucleolar ribonucleoprotein protein LCP5. (240 aa)
	imp3	U3 small nucleolar ribonucleoprotein protein IMP3. (183 aa)
	ENSSGRP00000109659	EBNA1 binding protein 2. (254 aa)
	ENSSGRP00000110716	Zinc finger protein 622-like. (503 aa)
	krr1	KRR1 small subunit processome component homolog isoform X1. (376 aa)
	fcf1	U3 small nucleolar RNA-associated protein 24. (211 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bms1	ENSSGRP00000002527	ENSSGRP00000094603	ENSSGRP00000002527	Ribosome biogenesis protein BMS1 homolog.	annotation not available	0.629
Bms1	ENSSGRP00000002529	ENSSGRP00000094603	ENSSGRP00000002529	Ribosome biogenesis protein BMS1 homolog.	annotation not available	0.629
Bms1	ENSSGRP00000003574	ENSSGRP00000094603	ENSSGRP00000003574	Ribosome biogenesis protein BMS1 homolog.	WD repeat-containing protein 74-like.	0.788
Bms1	ENSSGRP00000006101	ENSSGRP00000094603	ENSSGRP00000006101	Ribosome biogenesis protein BMS1 homolog.	annotation not available	0.927
Bms1	ENSSGRP00000006700	ENSSGRP00000094603	ENSSGRP00000006700	Ribosome biogenesis protein BMS1 homolog.	annotation not available	0.813
Bms1	ENSSGRP00000008371	ENSSGRP00000094603	ENSSGRP00000008371	Ribosome biogenesis protein BMS1 homolog.	NOC2-like nucleolar associated transcriptional repressor.	0.943
Bms1	ENSSGRP00000009028	ENSSGRP00000094603	ENSSGRP00000009028	Ribosome biogenesis protein BMS1 homolog.	annotation not available	0.927
Bms1	ENSSGRP00000011548	ENSSGRP00000094603	ENSSGRP00000011548	Ribosome biogenesis protein BMS1 homolog.	BOP1 ribosomal biogenesis factor.	0.873
Bms1	ENSSGRP00000013069	ENSSGRP00000094603	ENSSGRP00000013069	Ribosome biogenesis protein BMS1 homolog.	UTP3 small subunit processome component.	0.999
Bms1	ENSSGRP00000015598	ENSSGRP00000094603	ENSSGRP00000015598	Ribosome biogenesis protein BMS1 homolog.	WD repeat domain 36.	0.999
Bms1	ENSSGRP00000017321	ENSSGRP00000094603	ENSSGRP00000017321	Ribosome biogenesis protein BMS1 homolog.	U3 small nucleolar ribonucleoprotein protein LCP5.	0.996
Bms1	ENSSGRP00000026240	ENSSGRP00000094603	ENSSGRP00000026240	Ribosome biogenesis protein BMS1 homolog.	annotation not available	0.998
Bms1	ENSSGRP00000028008	ENSSGRP00000094603	ENSSGRP00000028008	Ribosome biogenesis protein BMS1 homolog.	NOP14 nucleolar protein homolog (yeast).	0.999
Bms1	ENSSGRP00000028750	ENSSGRP00000094603	ENSSGRP00000028750	Ribosome biogenesis protein BMS1 homolog.	annotation not available	0.878
Bms1	ENSSGRP00000031192	ENSSGRP00000094603	ENSSGRP00000031192	Ribosome biogenesis protein BMS1 homolog.	Nucleolar protein 56-like isoform X1.	0.998
Bms1	ENSSGRP00000031624	ENSSGRP00000094603	ENSSGRP00000031624	Ribosome biogenesis protein BMS1 homolog.	UTP6 small subunit processome component.	0.997
Bms1	ENSSGRP00000033381	ENSSGRP00000094603	ENSSGRP00000033381	Ribosome biogenesis protein BMS1 homolog.	RRNA 2'-O-methyltransferase fibrillarin-like.	0.992
Bms1	ENSSGRP00000034657	ENSSGRP00000094603	ENSSGRP00000034657	Ribosome biogenesis protein BMS1 homolog.	Nucleolar protein 6 (RNA-associated).	0.998
Bms1	ENSSGRP00000035354	ENSSGRP00000094603	ENSSGRP00000035354	Ribosome biogenesis protein BMS1 homolog.	KRI1 homolog.	0.895
Bms1	ENSSGRP00000038627	ENSSGRP00000094603	ENSSGRP00000038627	Ribosome biogenesis protein BMS1 homolog.	Nucleolar protein 6 (RNA-associated).	0.998