(30 nodes) Preribosome, large subunit precursor network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000003574	WD repeat-containing protein 74-like. (201 aa)
	bop1	Ribosome biogenesis protein BOP1. (769 aa)
	ENSSGRP00000006101	annotation not available (231 aa)
	ENSSGRP00000008371	NOC2-like nucleolar associated transcriptional repressor. (510 aa)
	ENSSGRP00000011548	BOP1 ribosomal biogenesis factor. (458 aa)
	Ftsj3	AdoMet-dependent rRNA methyltransferase SPB1. (605 aa)
	ENSSGRP00000040247	annotation not available (59 aa)
	ENSSGRP00000089012	Ribosomal RNA processing 1. (602 aa)
	ENSSGRP00000091174	MRNA turnover protein 4 homolog. (266 aa)
	LOC107585652	Ribosome biogenesis protein NSA2 homolog. (242 aa)
	ENSSGRP00000100769	Ribosome production factor 1-like. (366 aa)
	eif6	Eukaryotic translation initiation factor 6. (245 aa)
	rrs1	Ribosome biogenesis regulatory protein homolog. (357 aa)
	LOC107581420	Ribosome biogenesis protein wdr12-like. (405 aa)
	ENSSGRP00000109659	EBNA1 binding protein 2. (254 aa)
	ENSSGRP00000110716	Zinc finger protein 622-like. (503 aa)
	ENSSGRP00000005603	Eukaryotic translation initiation factor 6-like. (264 aa)
	RPF1	Ribosome production factor 1. (353 aa)
	LOC107566970	Protein MAK16 homolog. (296 aa)
	ENSSGRP00000044344	RRP15-like protein isoform X1. (251 aa)
	LOC107599372	Ribosome biogenesis protein NSA2 homolog. (260 aa)
	LOC107590198	Ribosome biogenesis regulatory protein homolog. (344 aa)
	ENSSGRP00000060258	Ribosome biogenesis protein wdr12-like. (426 aa)
	ENSSGRP00000064203	60S ribosome subunit biogenesis protein NIP7 homolog. (129 aa)
	nip7	60S ribosome subunit biogenesis protein NIP7 homolog. (180 aa)
	LOC107555140	WD repeat-containing protein 74-like. (384 aa)
	ENSSGRP00000076966	Pescadillo. (495 aa)
	MAK16	Protein MAK16 homolog. (298 aa)
	pes1	Pescadillo homolog. (577 aa)
	noc2l	Nucleolar complex protein 2 homolog. (756 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000003574	ENSSGRP00000005603	ENSSGRP00000003574	ENSSGRP00000005603	WD repeat-containing protein 74-like.	Eukaryotic translation initiation factor 6-like.	0.948
ENSSGRP00000003574	ENSSGRP00000006101	ENSSGRP00000003574	ENSSGRP00000006101	WD repeat-containing protein 74-like.	annotation not available	0.991
ENSSGRP00000003574	ENSSGRP00000008371	ENSSGRP00000003574	ENSSGRP00000008371	WD repeat-containing protein 74-like.	NOC2-like nucleolar associated transcriptional repressor.	0.983
ENSSGRP00000003574	ENSSGRP00000011548	ENSSGRP00000003574	ENSSGRP00000011548	WD repeat-containing protein 74-like.	BOP1 ribosomal biogenesis factor.	0.992
ENSSGRP00000003574	ENSSGRP00000040247	ENSSGRP00000003574	ENSSGRP00000040247	WD repeat-containing protein 74-like.	annotation not available	0.948
ENSSGRP00000003574	ENSSGRP00000044344	ENSSGRP00000003574	ENSSGRP00000044344	WD repeat-containing protein 74-like.	RRP15-like protein isoform X1.	0.982
ENSSGRP00000003574	ENSSGRP00000060258	ENSSGRP00000003574	ENSSGRP00000060258	WD repeat-containing protein 74-like.	Ribosome biogenesis protein wdr12-like.	0.994
ENSSGRP00000003574	ENSSGRP00000064203	ENSSGRP00000003574	ENSSGRP00000064203	WD repeat-containing protein 74-like.	60S ribosome subunit biogenesis protein NIP7 homolog.	0.955
ENSSGRP00000003574	ENSSGRP00000076966	ENSSGRP00000003574	ENSSGRP00000076966	WD repeat-containing protein 74-like.	Pescadillo.	0.992
ENSSGRP00000003574	ENSSGRP00000089012	ENSSGRP00000003574	ENSSGRP00000089012	WD repeat-containing protein 74-like.	Ribosomal RNA processing 1.	0.999
ENSSGRP00000003574	ENSSGRP00000091174	ENSSGRP00000003574	ENSSGRP00000091174	WD repeat-containing protein 74-like.	MRNA turnover protein 4 homolog.	0.991
ENSSGRP00000003574	ENSSGRP00000100769	ENSSGRP00000003574	ENSSGRP00000100769	WD repeat-containing protein 74-like.	Ribosome production factor 1-like.	0.997
ENSSGRP00000003574	ENSSGRP00000109659	ENSSGRP00000003574	ENSSGRP00000109659	WD repeat-containing protein 74-like.	EBNA1 binding protein 2.	0.998
ENSSGRP00000003574	ENSSGRP00000110716	ENSSGRP00000003574	ENSSGRP00000110716	WD repeat-containing protein 74-like.	Zinc finger protein 622-like.	0.462
ENSSGRP00000003574	Ftsj3	ENSSGRP00000003574	ENSSGRP00000029573	WD repeat-containing protein 74-like.	AdoMet-dependent rRNA methyltransferase SPB1.	0.998
ENSSGRP00000003574	LOC107566970	ENSSGRP00000003574	ENSSGRP00000042872	WD repeat-containing protein 74-like.	Protein MAK16 homolog.	0.995
ENSSGRP00000003574	LOC107581420	ENSSGRP00000003574	ENSSGRP00000107986	WD repeat-containing protein 74-like.	Ribosome biogenesis protein wdr12-like.	0.994
ENSSGRP00000003574	LOC107585652	ENSSGRP00000003574	ENSSGRP00000093709	WD repeat-containing protein 74-like.	Ribosome biogenesis protein NSA2 homolog.	0.986
ENSSGRP00000003574	LOC107590198	ENSSGRP00000003574	ENSSGRP00000057191	WD repeat-containing protein 74-like.	Ribosome biogenesis regulatory protein homolog.	0.828
ENSSGRP00000003574	LOC107599372	ENSSGRP00000003574	ENSSGRP00000049465	WD repeat-containing protein 74-like.	Ribosome biogenesis protein NSA2 homolog.	0.986