(18 nodes) Preribosome, small subunit precursor network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107592627	Pre-rRNA-processing protein TSR1 homolog isoform X1. (837 aa)
	ENSSGRP00000102711	Serine/threonine-protein kinase RIO1-like. (544 aa)
	LOC107548794	U3 small nucleolar RNA-associated protein 19. (537 aa)
	ENSSGRP00000096415	RIO kinase 3 (yeast). (333 aa)
	LOC107585596	Pre-rRNA-processing protein TSR1 homolog. (835 aa)
	ENSSGRP00000089012	Ribosomal RNA processing 1. (602 aa)
	ENSSGRP00000046341	annotation not available (55 aa)
	ltv1	Protein LTV1 homolog isoform X1. (469 aa)
	ENSSGRP00000044215	U3 small nucleolar RNA-associated protein 19. (439 aa)
	LOC107569751	Essential nuclear protein 1. (425 aa)
	NOP14	Nucleolar protein 14. (797 aa)
	Ftsj3	AdoMet-dependent rRNA methyltransferase SPB1. (605 aa)
	ENSSGRP00000028750	annotation not available (460 aa)
	ENSSGRP00000028008	NOP14 nucleolar protein homolog (yeast). (555 aa)
	LOC107572361	Essential nuclear protein 1. (385 aa)
	riok3	Serine/threonine-protein kinase RIO3. (507 aa)
	ENSSGRP00000009028	annotation not available (293 aa)
	ENSSGRP00000006700	annotation not available (365 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000006700	ENSSGRP00000009028	ENSSGRP00000006700	ENSSGRP00000009028	annotation not available	annotation not available	0.993
ENSSGRP00000006700	ENSSGRP00000028008	ENSSGRP00000006700	ENSSGRP00000028008	annotation not available	NOP14 nucleolar protein homolog (yeast).	0.706
ENSSGRP00000006700	ENSSGRP00000028750	ENSSGRP00000006700	ENSSGRP00000028750	annotation not available	annotation not available	0.462
ENSSGRP00000006700	ENSSGRP00000044215	ENSSGRP00000006700	ENSSGRP00000044215	annotation not available	U3 small nucleolar RNA-associated protein 19.	0.525
ENSSGRP00000006700	ENSSGRP00000046341	ENSSGRP00000006700	ENSSGRP00000046341	annotation not available	annotation not available	0.966
ENSSGRP00000006700	ENSSGRP00000089012	ENSSGRP00000006700	ENSSGRP00000089012	annotation not available	Ribosomal RNA processing 1.	0.661
ENSSGRP00000006700	ENSSGRP00000096415	ENSSGRP00000006700	ENSSGRP00000096415	annotation not available	RIO kinase 3 (yeast).	0.665
ENSSGRP00000006700	Ftsj3	ENSSGRP00000006700	ENSSGRP00000029573	annotation not available	AdoMet-dependent rRNA methyltransferase SPB1.	0.576
ENSSGRP00000006700	LOC107548794	ENSSGRP00000006700	ENSSGRP00000101144	annotation not available	U3 small nucleolar RNA-associated protein 19.	0.525
ENSSGRP00000006700	LOC107569751	ENSSGRP00000006700	ENSSGRP00000039980	annotation not available	Essential nuclear protein 1.	0.930
ENSSGRP00000006700	LOC107572361	ENSSGRP00000006700	ENSSGRP00000022478	annotation not available	Essential nuclear protein 1.	0.930
ENSSGRP00000006700	LOC107585596	ENSSGRP00000006700	ENSSGRP00000089229	annotation not available	Pre-rRNA-processing protein TSR1 homolog.	0.932
ENSSGRP00000006700	LOC107592627	ENSSGRP00000006700	ENSSGRP00000106528	annotation not available	Pre-rRNA-processing protein TSR1 homolog isoform X1.	0.932
ENSSGRP00000006700	NOP14	ENSSGRP00000006700	ENSSGRP00000036545	annotation not available	Nucleolar protein 14.	0.706
ENSSGRP00000006700	ltv1	ENSSGRP00000006700	ENSSGRP00000051911	annotation not available	Protein LTV1 homolog isoform X1.	0.993
ENSSGRP00000006700	riok3	ENSSGRP00000006700	ENSSGRP00000020374	annotation not available	Serine/threonine-protein kinase RIO3.	0.645
ENSSGRP00000009028	ENSSGRP00000006700	ENSSGRP00000009028	ENSSGRP00000006700	annotation not available	annotation not available	0.993
ENSSGRP00000009028	ENSSGRP00000028008	ENSSGRP00000009028	ENSSGRP00000028008	annotation not available	NOP14 nucleolar protein homolog (yeast).	0.949
ENSSGRP00000009028	ENSSGRP00000028750	ENSSGRP00000009028	ENSSGRP00000028750	annotation not available	annotation not available	0.420
ENSSGRP00000009028	ENSSGRP00000044215	ENSSGRP00000009028	ENSSGRP00000044215	annotation not available	U3 small nucleolar RNA-associated protein 19.	0.895