(10 nodes) Germ-line stem cell population maintenance network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107561271	Piwi-like protein 2. (1046 aa)
	ENSSGRP00000108375	PR domain zinc finger protein 14-like. (569 aa)
	ENSSGRP00000101772	annotation not available (132 aa)
	ENSSGRP00000094608	Failed axon connections homolog. (128 aa)
	LOC107587769	Failed axon connections homolog isoform X1. (410 aa)
	LOC107579532	Failed axon connections homolog. (404 aa)
	LOC107560971	Piwi-like protein 2. (1090 aa)
	LOC107552822	Failed axon connections homolog. (410 aa)
	ENSSGRP00000017277	PR domain zinc finger protein 14-like. (561 aa)
	ENSSGRP00000013721	Nanos homolog 2. (154 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000013721	LOC107560971	ENSSGRP00000013721	ENSSGRP00000058678	Nanos homolog 2.	Piwi-like protein 2.	0.649
ENSSGRP00000013721	LOC107561271	ENSSGRP00000013721	ENSSGRP00000001374	Nanos homolog 2.	Piwi-like protein 2.	0.649
ENSSGRP00000101772	LOC107560971	ENSSGRP00000101772	ENSSGRP00000058678	annotation not available	Piwi-like protein 2.	0.477
ENSSGRP00000101772	LOC107561271	ENSSGRP00000101772	ENSSGRP00000001374	annotation not available	Piwi-like protein 2.	0.477
LOC107560971	ENSSGRP00000013721	ENSSGRP00000058678	ENSSGRP00000013721	Piwi-like protein 2.	Nanos homolog 2.	0.649
LOC107560971	ENSSGRP00000101772	ENSSGRP00000058678	ENSSGRP00000101772	Piwi-like protein 2.	annotation not available	0.477
LOC107561271	ENSSGRP00000013721	ENSSGRP00000001374	ENSSGRP00000013721	Piwi-like protein 2.	Nanos homolog 2.	0.649
LOC107561271	ENSSGRP00000101772	ENSSGRP00000001374	ENSSGRP00000101772	Piwi-like protein 2.	annotation not available	0.477