(18 nodes) P granule organization network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107601535	Tudor domain-containing protein 6-like isoform X1. (2125 aa)
	ENSSGRP00000043832	Uncharacterized protein LOC107577482. (476 aa)
	ENSSGRP00000036700	Dynactin 2 (p50). (325 aa)
	ENSSGRP00000035644	Tudor domain-containing protein 1/4/6/7. (1132 aa)
	tdrkh	Tudor and KH domain-containing protein isoform X1. (904 aa)
	LOC107558166	Dynactin subunit 2. (419 aa)
	LOC107569524	Mitochondrial cardiolipin hydrolase-like. (246 aa)
	LOC107581549	Tudor domain-containing protein 1/4/6/7. (1185 aa)
	LOC107564078	Tudor domain-containing protein 1/4/6/7. (1073 aa)
	LOC107592689	Tudor domain-containing protein 5-like. (911 aa)
	LOC107557954	Tudor domain-containing protein 1/4/6/7. (1077 aa)
	LOC107597872	Tudor domain-containing protein 1/4/6/7. (1095 aa)
	ENSSGRP00000070829	Tudor domain-containing protein 1/4/6/7. (1753 aa)
	ENSSGRP00000067484	Tudor domain-containing protein 1/4/6/7. (1790 aa)
	LOC107549729	Tudor domain-containing protein 1/4/6/7. (1099 aa)
	ENSSGRP00000064766	annotation not available (577 aa)
	ENSSGRP00000055008	Tudor domain-containing protein 5-like. (614 aa)
	ENSSGRP00000052513	Si:ch211-189e2.3. (1386 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000035644	ENSSGRP00000043832	ENSSGRP00000035644	ENSSGRP00000043832	Tudor domain-containing protein 1/4/6/7.	Uncharacterized protein LOC107577482.	0.582
ENSSGRP00000035644	LOC107569524	ENSSGRP00000035644	ENSSGRP00000015561	Tudor domain-containing protein 1/4/6/7.	Mitochondrial cardiolipin hydrolase-like.	0.654
ENSSGRP00000035644	tdrkh	ENSSGRP00000035644	ENSSGRP00000028965	Tudor domain-containing protein 1/4/6/7.	Tudor and KH domain-containing protein isoform X1.	0.582
ENSSGRP00000043832	ENSSGRP00000035644	ENSSGRP00000043832	ENSSGRP00000035644	Uncharacterized protein LOC107577482.	Tudor domain-containing protein 1/4/6/7.	0.582
ENSSGRP00000043832	ENSSGRP00000052513	ENSSGRP00000043832	ENSSGRP00000052513	Uncharacterized protein LOC107577482.	Si:ch211-189e2.3.	0.548
ENSSGRP00000043832	ENSSGRP00000064766	ENSSGRP00000043832	ENSSGRP00000064766	Uncharacterized protein LOC107577482.	annotation not available	0.548
ENSSGRP00000043832	ENSSGRP00000067484	ENSSGRP00000043832	ENSSGRP00000067484	Uncharacterized protein LOC107577482.	Tudor domain-containing protein 1/4/6/7.	0.548
ENSSGRP00000043832	ENSSGRP00000070829	ENSSGRP00000043832	ENSSGRP00000070829	Uncharacterized protein LOC107577482.	Tudor domain-containing protein 1/4/6/7.	0.548
ENSSGRP00000043832	LOC107569524	ENSSGRP00000043832	ENSSGRP00000015561	Uncharacterized protein LOC107577482.	Mitochondrial cardiolipin hydrolase-like.	0.658
ENSSGRP00000043832	LOC107581549	ENSSGRP00000043832	ENSSGRP00000013538	Uncharacterized protein LOC107577482.	Tudor domain-containing protein 1/4/6/7.	0.582
ENSSGRP00000043832	LOC107601535	ENSSGRP00000043832	ENSSGRP00000048495	Uncharacterized protein LOC107577482.	Tudor domain-containing protein 6-like isoform X1.	0.548
ENSSGRP00000052513	ENSSGRP00000043832	ENSSGRP00000052513	ENSSGRP00000043832	Si:ch211-189e2.3.	Uncharacterized protein LOC107577482.	0.548
ENSSGRP00000052513	LOC107569524	ENSSGRP00000052513	ENSSGRP00000015561	Si:ch211-189e2.3.	Mitochondrial cardiolipin hydrolase-like.	0.433
ENSSGRP00000052513	tdrkh	ENSSGRP00000052513	ENSSGRP00000028965	Si:ch211-189e2.3.	Tudor and KH domain-containing protein isoform X1.	0.548
ENSSGRP00000055008	LOC107569524	ENSSGRP00000055008	ENSSGRP00000015561	Tudor domain-containing protein 5-like.	Mitochondrial cardiolipin hydrolase-like.	0.648
ENSSGRP00000064766	ENSSGRP00000043832	ENSSGRP00000064766	ENSSGRP00000043832	annotation not available	Uncharacterized protein LOC107577482.	0.548
ENSSGRP00000064766	LOC107569524	ENSSGRP00000064766	ENSSGRP00000015561	annotation not available	Mitochondrial cardiolipin hydrolase-like.	0.431
ENSSGRP00000064766	tdrkh	ENSSGRP00000064766	ENSSGRP00000028965	annotation not available	Tudor and KH domain-containing protein isoform X1.	0.548
ENSSGRP00000067484	ENSSGRP00000043832	ENSSGRP00000067484	ENSSGRP00000043832	Tudor domain-containing protein 1/4/6/7.	Uncharacterized protein LOC107577482.	0.548
ENSSGRP00000067484	LOC107569524	ENSSGRP00000067484	ENSSGRP00000015561	Tudor domain-containing protein 1/4/6/7.	Mitochondrial cardiolipin hydrolase-like.	0.434