(47 nodes) GTP-dependent protein binding network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000003540	Ras-related protein Rab-32-like. (172 aa)
	AP3B1	Adaptor related protein complex 3 subunit beta 1. (1013 aa)
	ENSSGRP00000002761	Ras-related protein Rab-38-like. (220 aa)
	LOC107551943	Ras-related protein M-Ras-like isoform X1. (215 aa)
	ENSSGRP00000108950	annotation not available (93 aa)
	LOC107592692	Ras-related protein Rab-3B-like. (217 aa)
	RAB3C-2	Ras-related protein Rab-3C. (224 aa)
	LOC107585037	Ras-related protein Rab-3A-like isoform X1. (220 aa)
	ENSSGRP00000097325	RAB32b, member RAS oncogene family. (211 aa)
	LOC107586618	Ras-related protein Rab-32-like. (210 aa)
	LOC107596921	Partitioning defective 6 homolog alpha-like. (387 aa)
	ENSSGRP00000096803	Ras-related protein Rab-3D-like. (123 aa)
	ENSSGRP00000094206	Zgc:162171. (80 aa)
	LOC107588217	Ras-related protein Rab-38-like. (224 aa)
	ENSSGRP00000087361	RAB38b, member of RAS oncogene family. (101 aa)
	LOC107553558	Ras-related protein Rab-3A. (227 aa)
	ENSSGRP00000085213	annotation not available (930 aa)
	ENSSGRP00000084956	Hermansky-Pudlak syndrome 6 protein homolog isoform X1. (800 aa)
	LOC107601480	Ras-related protein Rab-32-like. (213 aa)
	LOC107550248	Ras-related protein Rab-3D-like. (220 aa)
	ENSSGRP00000076312	Early endosome antigen 1-like isoform X1. (1390 aa)
	AP3B2	AP-3 complex subunit beta-2-like isoform X1. (1127 aa)
	LOC107550615	Ras-related protein Rab-3A-like isoform X1. (231 aa)
	LOC107593037	Ras-related protein M-Ras-like. (208 aa)
	AP3B1-2	Adaptor related protein complex 3 subunit beta 1. (1009 aa)
	rab32	RAB32, member RAS oncogene family. (218 aa)
	LOC107557212	Ras-related protein Rab-38-like. (214 aa)
	RAB38-2	RAB38, member RAS oncogene family. (190 aa)
	LOC107553935	Early endosome antigen 1-like. (1369 aa)
	LOC107587007	Ras-related protein M-Ras-like. (208 aa)
	LOC107599464	Ras-related protein Rab-3B-like. (123 aa)
	ENSSGRP00000051495	Hermansky-Pudlak syndrome 6 protein homolog isoform X1. (806 aa)
	ENSSGRP00000034992	Rap guanine nucleotide exchange factor (GEF) 5a. (634 aa)
	LOC107594109	Ras-related protein Rab-32-like. (208 aa)
	LOC107583728	Partitioning defective 6 homolog alpha-like. (390 aa)
	ENSSGRP00000031303	annotation not available (654 aa)
	ENSSGRP00000027484	GTP-binding protein Rab-3D-like. (212 aa)
	ENSSGRP00000026578	annotation not available (747 aa)
	LOC107600440	Ras-related protein M-Ras. (208 aa)
	RAB38	Ras-related protein Rab-38-like. (211 aa)
	LOC107597148	Ras-related protein Rab-3A-like. (226 aa)
	rab3c	Ras-related protein Rab-3C. (224 aa)
	LOC107569532	GTP-binding protein Rab-3D-like. (222 aa)
	ENSSGRP00000011409	annotation not available (550 aa)
	ENSSGRP00000011404	Rap guanine nucleotide exchange factor (GEF) 5b. (271 aa)
	LOC107599832	Ras-related protein Rab-3C-like. (281 aa)
	RAB3C	RAB3C, member RAS oncogene family. (211 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000011404	LOC107551943	ENSSGRP00000011404	ENSSGRP00000112385	Rap guanine nucleotide exchange factor (GEF) 5b.	Ras-related protein M-Ras-like isoform X1.	0.448
ENSSGRP00000011404	LOC107587007	ENSSGRP00000011404	ENSSGRP00000055405	Rap guanine nucleotide exchange factor (GEF) 5b.	Ras-related protein M-Ras-like.	0.448
ENSSGRP00000011404	LOC107593037	ENSSGRP00000011404	ENSSGRP00000070963	Rap guanine nucleotide exchange factor (GEF) 5b.	Ras-related protein M-Ras-like.	0.448
ENSSGRP00000011404	LOC107600440	ENSSGRP00000011404	ENSSGRP00000020899	Rap guanine nucleotide exchange factor (GEF) 5b.	Ras-related protein M-Ras.	0.448
ENSSGRP00000011409	LOC107551943	ENSSGRP00000011409	ENSSGRP00000112385	annotation not available	Ras-related protein M-Ras-like isoform X1.	0.448
ENSSGRP00000011409	LOC107587007	ENSSGRP00000011409	ENSSGRP00000055405	annotation not available	Ras-related protein M-Ras-like.	0.448
ENSSGRP00000011409	LOC107593037	ENSSGRP00000011409	ENSSGRP00000070963	annotation not available	Ras-related protein M-Ras-like.	0.448
ENSSGRP00000011409	LOC107600440	ENSSGRP00000011409	ENSSGRP00000020899	annotation not available	Ras-related protein M-Ras.	0.448
ENSSGRP00000026578	LOC107551943	ENSSGRP00000026578	ENSSGRP00000112385	annotation not available	Ras-related protein M-Ras-like isoform X1.	0.448
ENSSGRP00000026578	LOC107587007	ENSSGRP00000026578	ENSSGRP00000055405	annotation not available	Ras-related protein M-Ras-like.	0.448
ENSSGRP00000026578	LOC107593037	ENSSGRP00000026578	ENSSGRP00000070963	annotation not available	Ras-related protein M-Ras-like.	0.448
ENSSGRP00000026578	LOC107600440	ENSSGRP00000026578	ENSSGRP00000020899	annotation not available	Ras-related protein M-Ras.	0.448
ENSSGRP00000031303	LOC107551943	ENSSGRP00000031303	ENSSGRP00000112385	annotation not available	Ras-related protein M-Ras-like isoform X1.	0.448
ENSSGRP00000031303	LOC107587007	ENSSGRP00000031303	ENSSGRP00000055405	annotation not available	Ras-related protein M-Ras-like.	0.448
ENSSGRP00000031303	LOC107593037	ENSSGRP00000031303	ENSSGRP00000070963	annotation not available	Ras-related protein M-Ras-like.	0.448
ENSSGRP00000031303	LOC107600440	ENSSGRP00000031303	ENSSGRP00000020899	annotation not available	Ras-related protein M-Ras.	0.448
ENSSGRP00000034992	LOC107551943	ENSSGRP00000034992	ENSSGRP00000112385	Rap guanine nucleotide exchange factor (GEF) 5a.	Ras-related protein M-Ras-like isoform X1.	0.448
ENSSGRP00000034992	LOC107587007	ENSSGRP00000034992	ENSSGRP00000055405	Rap guanine nucleotide exchange factor (GEF) 5a.	Ras-related protein M-Ras-like.	0.448
ENSSGRP00000034992	LOC107593037	ENSSGRP00000034992	ENSSGRP00000070963	Rap guanine nucleotide exchange factor (GEF) 5a.	Ras-related protein M-Ras-like.	0.448
ENSSGRP00000034992	LOC107600440	ENSSGRP00000034992	ENSSGRP00000020899	Rap guanine nucleotide exchange factor (GEF) 5a.	Ras-related protein M-Ras.	0.448