(35 nodes) Granulocyte differentiation network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107594427	Lymphoid enhancer-binding factor 1-like. (371 aa)
	CEBPA	CCAAT/enhancer binding protein (C/EBP), alpha. (286 aa)
	LOC107577313	GATA-binding factor 2-like. (253 aa)
	ENSSGRP00000019088	annotation not available (87 aa)
	ENSSGRP00000021196	Interleukin-17C-like. (161 aa)
	ENSSGRP00000022048	LOW QUALITY PROTEIN: mycocerosic acid synthase-like. (1988 aa)
	Lef1	Lymphoid enhancer-binding factor 1. (343 aa)
	fasn	Fatty acid synthase, animal type. (2525 aa)
	ENSSGRP00000028489	Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsD-like. (2123 aa)
	LOC107560351	CCAAT/enhancer binding protein (C/EBP), epsilon. (187 aa)
	ENSSGRP00000036038	GATA-binding factor 1-A-like. (336 aa)
	ENSSGRP00000036655	CCAAT/enhancer binding protein (C/EBP) 1. (170 aa)
	ENSSGRP00000042971	Fatty acid synthase. (1820 aa)
	ENSSGRP00000043252	Probable polyketide synthase 16. (2091 aa)
	ENSSGRP00000050843	U6 snRNA biogenesis 1. (270 aa)
	LOC107584779	Transcription factor Sp3-like isoform X1. (646 aa)
	ENSSGRP00000056021	GATA-binding factor 1-A-like. (88 aa)
	LOC107602662	Protein jagunal homolog 1-B. (183 aa)
	ENSSGRP00000060517	Dehydrogenase/reductase SDR family member 7B-like. (290 aa)
	SRP54	Signal recognition particle 54 kDa protein-like. (368 aa)
	LOC107583882	Interleukin-17C-like. (160 aa)
	LOC107584875	Trans-acting T-cell-specific transcription factor GATA-3-like. (409 aa)
	LOC107571641	Protein jagunal homolog 1-B-like. (183 aa)
	ENSSGRP00000077702	Sp3a transcription factor. (595 aa)
	ENSSGRP00000085791	U6 snRNA phosphodiesterase-like isoform X1. (280 aa)
	ENSSGRP00000085793	U6 snRNA biogenesis 1. (280 aa)
	ENSSGRP00000089684	Protein jagunal homolog 1-A-like. (235 aa)
	dhrs7b	Dehydrogenase/reductase SDR family member 7B. (317 aa)
	ENSSGRP00000098535	Sp3a transcription factor. (643 aa)
	srp54	Signal recognition particle 54 kDa protein. (504 aa)
	LOC107581944	GATA-binding factor 1-B-like. (417 aa)
	LOC107581370	Transcription factor Sp3-like isoform X1. (675 aa)
	LOC107589963	Nuclear receptor coactivator 2-like. (1480 aa)
	LOC107600432	Protein jagunal homolog 1-A. (183 aa)
	LOC107596035	Nuclear receptor coactivator 2. (1552 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEBPA	ENSSGRP00000056021	ENSSGRP00000007110	ENSSGRP00000056021	CCAAT/enhancer binding protein (C/EBP), alpha.	GATA-binding factor 1-A-like.	0.424
CEBPA	LOC107577313	ENSSGRP00000007110	ENSSGRP00000009367	CCAAT/enhancer binding protein (C/EBP), alpha.	GATA-binding factor 2-like.	0.424
CEBPA	LOC107581944	ENSSGRP00000007110	ENSSGRP00000107263	CCAAT/enhancer binding protein (C/EBP), alpha.	GATA-binding factor 1-B-like.	0.424
ENSSGRP00000021196	LOC107583882	ENSSGRP00000021196	ENSSGRP00000062817	Interleukin-17C-like.	Interleukin-17C-like.	0.900
ENSSGRP00000036038	ENSSGRP00000077702	ENSSGRP00000036038	ENSSGRP00000077702	GATA-binding factor 1-A-like.	Sp3a transcription factor.	0.438
ENSSGRP00000036038	ENSSGRP00000098535	ENSSGRP00000036038	ENSSGRP00000098535	GATA-binding factor 1-A-like.	Sp3a transcription factor.	0.438
ENSSGRP00000056021	CEBPA	ENSSGRP00000056021	ENSSGRP00000007110	GATA-binding factor 1-A-like.	CCAAT/enhancer binding protein (C/EBP), alpha.	0.424
ENSSGRP00000056021	ENSSGRP00000077702	ENSSGRP00000056021	ENSSGRP00000077702	GATA-binding factor 1-A-like.	Sp3a transcription factor.	0.438
ENSSGRP00000056021	ENSSGRP00000098535	ENSSGRP00000056021	ENSSGRP00000098535	GATA-binding factor 1-A-like.	Sp3a transcription factor.	0.438
ENSSGRP00000077702	ENSSGRP00000036038	ENSSGRP00000077702	ENSSGRP00000036038	Sp3a transcription factor.	GATA-binding factor 1-A-like.	0.438
ENSSGRP00000077702	ENSSGRP00000056021	ENSSGRP00000077702	ENSSGRP00000056021	Sp3a transcription factor.	GATA-binding factor 1-A-like.	0.438
ENSSGRP00000077702	LOC107577313	ENSSGRP00000077702	ENSSGRP00000009367	Sp3a transcription factor.	GATA-binding factor 2-like.	0.438
ENSSGRP00000077702	LOC107581944	ENSSGRP00000077702	ENSSGRP00000107263	Sp3a transcription factor.	GATA-binding factor 1-B-like.	0.438
ENSSGRP00000077702	LOC107584875	ENSSGRP00000077702	ENSSGRP00000064823	Sp3a transcription factor.	Trans-acting T-cell-specific transcription factor GATA-3-like.	0.438
ENSSGRP00000098535	ENSSGRP00000036038	ENSSGRP00000098535	ENSSGRP00000036038	Sp3a transcription factor.	GATA-binding factor 1-A-like.	0.438
ENSSGRP00000098535	ENSSGRP00000056021	ENSSGRP00000098535	ENSSGRP00000056021	Sp3a transcription factor.	GATA-binding factor 1-A-like.	0.438
ENSSGRP00000098535	LOC107577313	ENSSGRP00000098535	ENSSGRP00000009367	Sp3a transcription factor.	GATA-binding factor 2-like.	0.438
ENSSGRP00000098535	LOC107581944	ENSSGRP00000098535	ENSSGRP00000107263	Sp3a transcription factor.	GATA-binding factor 1-B-like.	0.438
ENSSGRP00000098535	LOC107584875	ENSSGRP00000098535	ENSSGRP00000064823	Sp3a transcription factor.	Trans-acting T-cell-specific transcription factor GATA-3-like.	0.438
LOC107577313	CEBPA	ENSSGRP00000009367	ENSSGRP00000007110	GATA-binding factor 2-like.	CCAAT/enhancer binding protein (C/EBP), alpha.	0.424