(6 nodes) Mre11 complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107582084	Nibrin-like. (858 aa)
	rad50	DNA repair protein RAD50 isoform X1. (1312 aa)
	ENSSGRP00000110723	annotation not available (56 aa)
	ENSSGRP00000086521	RAD50 homolog, double strand break repair protein. (1178 aa)
	LOC107595095	Nibrin-like isoform X1. (842 aa)
	mre11	Double-strand break repair protein MRE11A isoform X1. (717 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000086521	LOC107582084	ENSSGRP00000086521	ENSSGRP00000015571	RAD50 homolog, double strand break repair protein.	Nibrin-like.	0.979
ENSSGRP00000086521	LOC107595095	ENSSGRP00000086521	ENSSGRP00000079047	RAD50 homolog, double strand break repair protein.	Nibrin-like isoform X1.	0.979
ENSSGRP00000086521	mre11	ENSSGRP00000086521	ENSSGRP00000051217	RAD50 homolog, double strand break repair protein.	Double-strand break repair protein MRE11A isoform X1.	0.999
ENSSGRP00000110723	LOC107582084	ENSSGRP00000110723	ENSSGRP00000015571	annotation not available	Nibrin-like.	0.979
ENSSGRP00000110723	LOC107595095	ENSSGRP00000110723	ENSSGRP00000079047	annotation not available	Nibrin-like isoform X1.	0.979
ENSSGRP00000110723	mre11	ENSSGRP00000110723	ENSSGRP00000051217	annotation not available	Double-strand break repair protein MRE11A isoform X1.	0.999
LOC107582084	ENSSGRP00000086521	ENSSGRP00000015571	ENSSGRP00000086521	Nibrin-like.	RAD50 homolog, double strand break repair protein.	0.979
LOC107582084	ENSSGRP00000110723	ENSSGRP00000015571	ENSSGRP00000110723	Nibrin-like.	annotation not available	0.979
LOC107582084	LOC107595095	ENSSGRP00000015571	ENSSGRP00000079047	Nibrin-like.	Nibrin-like isoform X1.	0.900
LOC107582084	mre11	ENSSGRP00000015571	ENSSGRP00000051217	Nibrin-like.	Double-strand break repair protein MRE11A isoform X1.	0.999
LOC107582084	rad50	ENSSGRP00000015571	ENSSGRP00000110721	Nibrin-like.	DNA repair protein RAD50 isoform X1.	0.997
LOC107595095	ENSSGRP00000086521	ENSSGRP00000079047	ENSSGRP00000086521	Nibrin-like isoform X1.	RAD50 homolog, double strand break repair protein.	0.979
LOC107595095	ENSSGRP00000110723	ENSSGRP00000079047	ENSSGRP00000110723	Nibrin-like isoform X1.	annotation not available	0.979
LOC107595095	LOC107582084	ENSSGRP00000079047	ENSSGRP00000015571	Nibrin-like isoform X1.	Nibrin-like.	0.900
LOC107595095	mre11	ENSSGRP00000079047	ENSSGRP00000051217	Nibrin-like isoform X1.	Double-strand break repair protein MRE11A isoform X1.	0.999
LOC107595095	rad50	ENSSGRP00000079047	ENSSGRP00000110721	Nibrin-like isoform X1.	DNA repair protein RAD50 isoform X1.	0.997
mre11	ENSSGRP00000086521	ENSSGRP00000051217	ENSSGRP00000086521	Double-strand break repair protein MRE11A isoform X1.	RAD50 homolog, double strand break repair protein.	0.999
mre11	ENSSGRP00000110723	ENSSGRP00000051217	ENSSGRP00000110723	Double-strand break repair protein MRE11A isoform X1.	annotation not available	0.999
mre11	LOC107582084	ENSSGRP00000051217	ENSSGRP00000015571	Double-strand break repair protein MRE11A isoform X1.	Nibrin-like.	0.999
mre11	LOC107595095	ENSSGRP00000051217	ENSSGRP00000079047	Double-strand break repair protein MRE11A isoform X1.	Nibrin-like isoform X1.	0.999