(35 nodes) Axon regeneration network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GAP43	Neuromodulin-like. (208 aa)
	LOC107586807	Apolipoprotein D and lipocalin family protein. (186 aa)
	ENSSGRP00000001959	annotation not available (167 aa)
	ENSSGRP00000001871	Tenascin C. (1709 aa)
	ENSSGRP00000111645	E3 ubiquitin-protein ligase MYCBP2-like. (4482 aa)
	ENSSGRP00000075848	E3 ubiquitin-protein ligase MYCBP2. (4712 aa)
	LOC107590347	Apolipoprotein D and lipocalin family protein. (207 aa)
	LOC107590149	Achaete-scute complex protein. (196 aa)
	LOC107557469	Apolipoprotein D and lipocalin family protein. (185 aa)
	ENSSGRP00000012163	Chondroitin sulfate proteoglycan 5-like. (406 aa)
	ENSSGRP00000012484	Laminin subunit beta-1-like. (608 aa)
	tnr	Tenascin-R isoform X1. (1364 aa)
	ENSSGRP00000013740	Chondroitin sulfate proteoglycan 5b. (447 aa)
	ENSSGRP00000022723	Neural cell adhesion molecule L1.1-like. (1202 aa)
	ENSSGRP00000006528	Transcription factor AP-1-like. (305 aa)
	ENSSGRP00000028525	annotation not available (176 aa)
	Mtr	5-methyltetrahydrofolate--homocysteine methyltransferase. (1104 aa)
	LOC107598364	Neurogenin 1. (208 aa)
	LOC107596391	Achaete-scute homolog 1a-like isoform X1. (196 aa)
	ENSSGRP00000051245	Neuromodulin-like. (168 aa)
	ENSSGRP00000052150	Neurogenin-1-like. (208 aa)
	LOC107558359	tenascin-R-like. (1323 aa)
	ENSSGRP00000069817	Transcription factor AP-1-like. (311 aa)
	LOC107595246	Laminin subunit beta-1-like. (1833 aa)
	LOC107563389	Transcription factor AP-1-like isoform X1. (323 aa)
	ENSSGRP00000089868	Zmp:0000000846. (1674 aa)
	LOC107589344	Laminin subunit beta-1-like. (1676 aa)
	ENSSGRP00000100782	Chondroitin sulfate proteoglycan 5b. (460 aa)
	ENSSGRP00000102415	LOW QUALITY PROTEIN: neural cell adhesion molecule L1.1-like. (1037 aa)
	ENSSGRP00000104212	Laminin, beta 2 (laminin S). (1725 aa)
	ENSSGRP00000110019	Laminin subunit beta-1-like. (1661 aa)
	ENSSGRP00000012160	Chondroitin sulfate proteoglycan 5a. (480 aa)
	ENSSGRP00000011693	annotation not available (131 aa)
	ENSSGRP00000010979	Tenascin C. (1721 aa)
	ENSSGRP00000009821	Zmp:0000000846. (1933 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000001871	ENSSGRP00000009821	ENSSGRP00000001871	ENSSGRP00000009821	Tenascin C.	Zmp:0000000846.	0.490
ENSSGRP00000001871	ENSSGRP00000010979	ENSSGRP00000001871	ENSSGRP00000010979	Tenascin C.	Tenascin C.	0.486
ENSSGRP00000001871	ENSSGRP00000089868	ENSSGRP00000001871	ENSSGRP00000089868	Tenascin C.	Zmp:0000000846.	0.497
ENSSGRP00000001871	LOC107558359	ENSSGRP00000001871	ENSSGRP00000064067	Tenascin C.	tenascin-R-like.	0.579
ENSSGRP00000001871	tnr	ENSSGRP00000001871	ENSSGRP00000013639	Tenascin C.	Tenascin-R isoform X1.	0.579
ENSSGRP00000006528	ENSSGRP00000069817	ENSSGRP00000006528	ENSSGRP00000069817	Transcription factor AP-1-like.	Transcription factor AP-1-like.	0.900
ENSSGRP00000006528	LOC107563389	ENSSGRP00000006528	ENSSGRP00000088629	Transcription factor AP-1-like.	Transcription factor AP-1-like isoform X1.	0.900
ENSSGRP00000009821	ENSSGRP00000001871	ENSSGRP00000009821	ENSSGRP00000001871	Zmp:0000000846.	Tenascin C.	0.490
ENSSGRP00000009821	ENSSGRP00000010979	ENSSGRP00000009821	ENSSGRP00000010979	Zmp:0000000846.	Tenascin C.	0.491
ENSSGRP00000009821	ENSSGRP00000089868	ENSSGRP00000009821	ENSSGRP00000089868	Zmp:0000000846.	Zmp:0000000846.	0.488
ENSSGRP00000009821	LOC107558359	ENSSGRP00000009821	ENSSGRP00000064067	Zmp:0000000846.	tenascin-R-like.	0.579
ENSSGRP00000009821	tnr	ENSSGRP00000009821	ENSSGRP00000013639	Zmp:0000000846.	Tenascin-R isoform X1.	0.579
ENSSGRP00000010979	ENSSGRP00000001871	ENSSGRP00000010979	ENSSGRP00000001871	Tenascin C.	Tenascin C.	0.486
ENSSGRP00000010979	ENSSGRP00000009821	ENSSGRP00000010979	ENSSGRP00000009821	Tenascin C.	Zmp:0000000846.	0.491
ENSSGRP00000010979	ENSSGRP00000089868	ENSSGRP00000010979	ENSSGRP00000089868	Tenascin C.	Zmp:0000000846.	0.496
ENSSGRP00000010979	LOC107558359	ENSSGRP00000010979	ENSSGRP00000064067	Tenascin C.	tenascin-R-like.	0.579
ENSSGRP00000010979	tnr	ENSSGRP00000010979	ENSSGRP00000013639	Tenascin C.	Tenascin-R isoform X1.	0.579
ENSSGRP00000022723	ENSSGRP00000102415	ENSSGRP00000022723	ENSSGRP00000102415	Neural cell adhesion molecule L1.1-like.	LOW QUALITY PROTEIN: neural cell adhesion molecule L1.1-like.	0.901
ENSSGRP00000052150	LOC107590149	ENSSGRP00000052150	ENSSGRP00000074272	Neurogenin-1-like.	Achaete-scute complex protein.	0.740
ENSSGRP00000052150	LOC107596391	ENSSGRP00000052150	ENSSGRP00000050187	Neurogenin-1-like.	Achaete-scute homolog 1a-like isoform X1.	0.740