(10 nodes) Early phagosome network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	appl1	DCC-interacting protein 13-alpha isoform X1. (714 aa)
	ENSSGRP00000072775	Unc-93 homolog B1, TLR signaling regulator. (541 aa)
	ENSSGRP00000061045	Synaptotagmin VIIb. (476 aa)
	ENSSGRP00000053630	Synaptotagmin-7-like. (485 aa)
	LOC107565741	DCC-interacting protein 13-beta-like. (664 aa)
	unc93b1	Protein unc-93 homolog B1 isoform X1. (625 aa)
	ENSSGRP00000025128	DCC-interacting protein 13-beta-like. (658 aa)
	ENSSGRP00000024719	HESX homeobox 1. (656 aa)
	ENSSGRP00000009285	Synaptotagmin-7-like isoform X1. (331 aa)
	ENSSGRP00000078238	Synaptotagmin-7-like. (552 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000024719	ENSSGRP00000025128	ENSSGRP00000024719	ENSSGRP00000025128	HESX homeobox 1.	DCC-interacting protein 13-beta-like.	0.995
ENSSGRP00000024719	LOC107565741	ENSSGRP00000024719	ENSSGRP00000035870	HESX homeobox 1.	DCC-interacting protein 13-beta-like.	0.995
ENSSGRP00000024719	appl1	ENSSGRP00000024719	ENSSGRP00000107002	HESX homeobox 1.	DCC-interacting protein 13-alpha isoform X1.	0.995
ENSSGRP00000025128	ENSSGRP00000024719	ENSSGRP00000025128	ENSSGRP00000024719	DCC-interacting protein 13-beta-like.	HESX homeobox 1.	0.995
ENSSGRP00000025128	LOC107565741	ENSSGRP00000025128	ENSSGRP00000035870	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-beta-like.	0.995
ENSSGRP00000025128	appl1	ENSSGRP00000025128	ENSSGRP00000107002	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-alpha isoform X1.	0.995
LOC107565741	ENSSGRP00000024719	ENSSGRP00000035870	ENSSGRP00000024719	DCC-interacting protein 13-beta-like.	HESX homeobox 1.	0.995
LOC107565741	ENSSGRP00000025128	ENSSGRP00000035870	ENSSGRP00000025128	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-beta-like.	0.995
LOC107565741	appl1	ENSSGRP00000035870	ENSSGRP00000107002	DCC-interacting protein 13-beta-like.	DCC-interacting protein 13-alpha isoform X1.	0.995
appl1	ENSSGRP00000024719	ENSSGRP00000107002	ENSSGRP00000024719	DCC-interacting protein 13-alpha isoform X1.	HESX homeobox 1.	0.995
appl1	ENSSGRP00000025128	ENSSGRP00000107002	ENSSGRP00000025128	DCC-interacting protein 13-alpha isoform X1.	DCC-interacting protein 13-beta-like.	0.995
appl1	LOC107565741	ENSSGRP00000107002	ENSSGRP00000035870	DCC-interacting protein 13-alpha isoform X1.	DCC-interacting protein 13-beta-like.	0.995