(48 nodes) Fin morphogenesis network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107586586	Protein transport protein Sec23A-like. (751 aa)
	ENSSGRP00000002492	LOW QUALITY PROTEIN: nipped-B-like protein B. (256 aa)
	ENSSGRP00000004929	Transcription factor Sp8-like. (372 aa)
	ENSSGRP00000005406	Fin bud initiation factor. (210 aa)
	LOC107575101	Fibroblast growth factor 16. (203 aa)
	ENSSGRP00000011416	annotation not available (90 aa)
	ENSSGRP00000013629	annotation not available (99 aa)
	LOC107568990	Fibroblast growth factor 16-like. (203 aa)
	tbx5	T-box transcription factor TBX5. (522 aa)
	LOC107548346	Dorsal-ventral patterning tolloid-like protein 1. (1022 aa)
	ENSSGRP00000023816	annotation not available (66 aa)
	ENSSGRP00000026589	Transcription factor Sp8. (455 aa)
	LOC107593970	Homeobox protein HoxB/C/D8. (256 aa)
	LOC107573801	Transcription factor Sp8-like. (399 aa)
	LOC107582680	Protein cereblon-like isoform X1. (334 aa)
	LOC107594572	Cohesin loading factor subunit SCC2. (2328 aa)
	ENSSGRP00000038808	Nipped-B-like protein B. (2402 aa)
	ENSSGRP00000040199	Mediator complex subunit 12. (1828 aa)
	ENSSGRP00000041345	Chordin-like. (861 aa)
	ENSSGRP00000044424	Homeobox protein Hox-C8a-like isoform X1. (257 aa)
	ENSSGRP00000044449	Heart- and neural crest derivatives-expressed protein 2-like. (208 aa)
	nipbl	Cohesin loading factor subunit SCC2. (2723 aa)
	ENSSGRP00000054226	NIPBL cohesin loading factor a. (2321 aa)
	ENSSGRP00000055869	Fibulin 1. (658 aa)
	LOC107589610	Protein transport protein Sec23A. (767 aa)
	LOC107571545	Cadherin 2, type 1, N-cadherin. (966 aa)
	LOC107556063	Sonic hedgehog protein A. (418 aa)
	LOC107552491	Heart- and neural crest derivatives-expressed protein 2. (208 aa)
	ENSSGRP00000068648	Bone morphogenetic protein 1-like. (977 aa)
	ENSSGRP00000070348	Fin bud initiation factor-like. (210 aa)
	dlx6	Homeobox protein DLX1/4/6. (246 aa)
	dlx5	Homeobox protein DLX-5. (283 aa)
	LOC107600696	Transcription factor Sp9. (439 aa)
	ENSSGRP00000088274	T-box transcription factor TBX5-A-like. (208 aa)
	LOC107553124	Bone morphogenetic protein 1-like. (955 aa)
	LOC107568336	Cadherin 2, type 1, N-cadherin. (908 aa)
	ENSSGRP00000091770	Cadherin 2, type 1, N-cadherin. (916 aa)
	LOC107591009	Sonic hedgehog protein A-like. (418 aa)
	ENSSGRP00000094572	Connexin 43. (282 aa)
	LOC107554690	Mediator of RNA polymerase II transcription subunit 12. (2073 aa)
	ENSSGRP00000097256	annotation not available (174 aa)
	LOC107588267	Transcription factor Sp9-like. (439 aa)
	LOC107591552	Dorsal-ventral patterning tolloid-like protein 1 isoform X1. (1022 aa)
	LOC107568814	Transcription factor Sp8-like. (409 aa)
	crbn	Protein cereblon. (446 aa)
	chrd	Chordin. (938 aa)
	LOC107591662	Homeobox protein Dlx6a-like. (248 aa)
	LOC107591663	Homeobox protein Dlx5a-like. (283 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000023816	ENSSGRP00000041345	ENSSGRP00000023816	ENSSGRP00000041345	annotation not available	Chordin-like.	0.843
ENSSGRP00000023816	chrd	ENSSGRP00000023816	ENSSGRP00000106203	annotation not available	Chordin.	0.843
ENSSGRP00000041345	ENSSGRP00000023816	ENSSGRP00000041345	ENSSGRP00000023816	Chordin-like.	annotation not available	0.843
ENSSGRP00000041345	ENSSGRP00000068648	ENSSGRP00000041345	ENSSGRP00000068648	Chordin-like.	Bone morphogenetic protein 1-like.	0.842
ENSSGRP00000041345	LOC107548346	ENSSGRP00000041345	ENSSGRP00000023623	Chordin-like.	Dorsal-ventral patterning tolloid-like protein 1.	0.843
ENSSGRP00000041345	LOC107553124	ENSSGRP00000041345	ENSSGRP00000089319	Chordin-like.	Bone morphogenetic protein 1-like.	0.842
ENSSGRP00000041345	LOC107591552	ENSSGRP00000041345	ENSSGRP00000101323	Chordin-like.	Dorsal-ventral patterning tolloid-like protein 1 isoform X1.	0.843
ENSSGRP00000041345	chrd	ENSSGRP00000041345	ENSSGRP00000106203	Chordin-like.	Chordin.	0.900
ENSSGRP00000044449	ENSSGRP00000088274	ENSSGRP00000044449	ENSSGRP00000088274	Heart- and neural crest derivatives-expressed protein 2-like.	T-box transcription factor TBX5-A-like.	0.661
ENSSGRP00000044449	LOC107591662	ENSSGRP00000044449	ENSSGRP00000109296	Heart- and neural crest derivatives-expressed protein 2-like.	Homeobox protein Dlx6a-like.	0.453
ENSSGRP00000044449	LOC107591663	ENSSGRP00000044449	ENSSGRP00000109298	Heart- and neural crest derivatives-expressed protein 2-like.	Homeobox protein Dlx5a-like.	0.450
ENSSGRP00000044449	dlx5	ENSSGRP00000044449	ENSSGRP00000072658	Heart- and neural crest derivatives-expressed protein 2-like.	Homeobox protein DLX-5.	0.450
ENSSGRP00000044449	dlx6	ENSSGRP00000044449	ENSSGRP00000072644	Heart- and neural crest derivatives-expressed protein 2-like.	Homeobox protein DLX1/4/6.	0.453
ENSSGRP00000044449	tbx5	ENSSGRP00000044449	ENSSGRP00000021910	Heart- and neural crest derivatives-expressed protein 2-like.	T-box transcription factor TBX5.	0.661
ENSSGRP00000068648	ENSSGRP00000041345	ENSSGRP00000068648	ENSSGRP00000041345	Bone morphogenetic protein 1-like.	Chordin-like.	0.842
ENSSGRP00000068648	chrd	ENSSGRP00000068648	ENSSGRP00000106203	Bone morphogenetic protein 1-like.	Chordin.	0.842
ENSSGRP00000088274	ENSSGRP00000044449	ENSSGRP00000088274	ENSSGRP00000044449	T-box transcription factor TBX5-A-like.	Heart- and neural crest derivatives-expressed protein 2-like.	0.661
ENSSGRP00000088274	LOC107552491	ENSSGRP00000088274	ENSSGRP00000063804	T-box transcription factor TBX5-A-like.	Heart- and neural crest derivatives-expressed protein 2.	0.661
ENSSGRP00000091770	ENSSGRP00000094572	ENSSGRP00000091770	ENSSGRP00000094572	Cadherin 2, type 1, N-cadherin.	Connexin 43.	0.714
ENSSGRP00000091770	ENSSGRP00000097256	ENSSGRP00000091770	ENSSGRP00000097256	Cadherin 2, type 1, N-cadherin.	annotation not available	0.738