(22 nodes) Histone H2B ubiquitination network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000002438	WW domain-containing adapter protein with coiled-coil-like isoform X1. (483 aa)
	ENSSGRP00000040577	Ring finger protein 20, E3 ubiquitin protein ligase. (858 aa)
	wac	WW domain-containing adapter protein with coiled-coil isoform X1. (552 aa)
	LOC107602009	Uncharacterized protein LOC107602009. (419 aa)
	LOC107553014	RNA polymerase-associated protein CTR9 homolog. (1159 aa)
	Rnf20	E3 ubiquitin-protein ligase BRE1A isoform X1. (976 aa)
	ENSSGRP00000004151	annotation not available (235 aa)
	LOC107570277	Probable E3 ubiquitin-protein ligase DTX3. (368 aa)
	ENSSGRP00000005927	E3 ubiquitin-protein ligase BRE1A-like. (173 aa)
	LOC107571783	Probable E3 ubiquitin-protein ligase DTX3 isoform X1. (384 aa)
	rnf8	E3 ubiquitin-protein ligase RNF8 isoform X1. (532 aa)
	ENSSGRP00000080354	Uncharacterized protein LOC107550323. (519 aa)
	ENSSGRP00000081077	Uncharacterized protein LOC107552605. (299 aa)
	ENSSGRP00000081230	WW domain-containing adapter protein with coiled-coil-like. (416 aa)
	ENSSGRP00000086117	E3 ubiquitin-protein ligase RNF8-like. (86 aa)
	LOC107563784	E3 ubiquitin-protein ligase BRE1B-like isoform X1. (1009 aa)
	ENSSGRP00000096558	Parafibromin-like. (458 aa)
	LOC107593758	Parafibromin. (530 aa)
	ENSSGRP00000108925	Si:dkey-3h3.3. (299 aa)
	ENSSGRP00000108926	Uncharacterized protein LOC107552564. (299 aa)
	ENSSGRP00000025310	RNA polymerase-associated protein CTR9 homolog. (1117 aa)
	LOC107565773	E3 ubiquitin-protein ligase BRE1B-like isoform X1. (1003 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000002438	ENSSGRP00000005927	ENSSGRP00000002438	ENSSGRP00000005927	WW domain-containing adapter protein with coiled-coil-like isoform X1.	E3 ubiquitin-protein ligase BRE1A-like.	0.752
ENSSGRP00000002438	ENSSGRP00000025310	ENSSGRP00000002438	ENSSGRP00000025310	WW domain-containing adapter protein with coiled-coil-like isoform X1.	RNA polymerase-associated protein CTR9 homolog.	0.646
ENSSGRP00000002438	ENSSGRP00000040577	ENSSGRP00000002438	ENSSGRP00000040577	WW domain-containing adapter protein with coiled-coil-like isoform X1.	Ring finger protein 20, E3 ubiquitin protein ligase.	0.752
ENSSGRP00000002438	ENSSGRP00000096558	ENSSGRP00000002438	ENSSGRP00000096558	WW domain-containing adapter protein with coiled-coil-like isoform X1.	Parafibromin-like.	0.640
ENSSGRP00000002438	LOC107553014	ENSSGRP00000002438	ENSSGRP00000055838	WW domain-containing adapter protein with coiled-coil-like isoform X1.	RNA polymerase-associated protein CTR9 homolog.	0.646
ENSSGRP00000002438	LOC107563784	ENSSGRP00000002438	ENSSGRP00000094153	WW domain-containing adapter protein with coiled-coil-like isoform X1.	E3 ubiquitin-protein ligase BRE1B-like isoform X1.	0.752
ENSSGRP00000002438	LOC107565773	ENSSGRP00000002438	ENSSGRP00000033720	WW domain-containing adapter protein with coiled-coil-like isoform X1.	E3 ubiquitin-protein ligase BRE1B-like isoform X1.	0.752
ENSSGRP00000002438	LOC107593758	ENSSGRP00000002438	ENSSGRP00000107347	WW domain-containing adapter protein with coiled-coil-like isoform X1.	Parafibromin.	0.640
ENSSGRP00000002438	Rnf20	ENSSGRP00000002438	ENSSGRP00000001604	WW domain-containing adapter protein with coiled-coil-like isoform X1.	E3 ubiquitin-protein ligase BRE1A isoform X1.	0.752
ENSSGRP00000004151	ENSSGRP00000005927	ENSSGRP00000004151	ENSSGRP00000005927	annotation not available	E3 ubiquitin-protein ligase BRE1A-like.	0.752
ENSSGRP00000004151	ENSSGRP00000025310	ENSSGRP00000004151	ENSSGRP00000025310	annotation not available	RNA polymerase-associated protein CTR9 homolog.	0.646
ENSSGRP00000004151	ENSSGRP00000040577	ENSSGRP00000004151	ENSSGRP00000040577	annotation not available	Ring finger protein 20, E3 ubiquitin protein ligase.	0.752
ENSSGRP00000004151	ENSSGRP00000096558	ENSSGRP00000004151	ENSSGRP00000096558	annotation not available	Parafibromin-like.	0.640
ENSSGRP00000004151	LOC107553014	ENSSGRP00000004151	ENSSGRP00000055838	annotation not available	RNA polymerase-associated protein CTR9 homolog.	0.646
ENSSGRP00000004151	LOC107563784	ENSSGRP00000004151	ENSSGRP00000094153	annotation not available	E3 ubiquitin-protein ligase BRE1B-like isoform X1.	0.752
ENSSGRP00000004151	LOC107565773	ENSSGRP00000004151	ENSSGRP00000033720	annotation not available	E3 ubiquitin-protein ligase BRE1B-like isoform X1.	0.752
ENSSGRP00000004151	LOC107593758	ENSSGRP00000004151	ENSSGRP00000107347	annotation not available	Parafibromin.	0.640
ENSSGRP00000004151	Rnf20	ENSSGRP00000004151	ENSSGRP00000001604	annotation not available	E3 ubiquitin-protein ligase BRE1A isoform X1.	0.752
ENSSGRP00000005927	ENSSGRP00000002438	ENSSGRP00000005927	ENSSGRP00000002438	E3 ubiquitin-protein ligase BRE1A-like.	WW domain-containing adapter protein with coiled-coil-like isoform X1.	0.752
ENSSGRP00000005927	ENSSGRP00000004151	ENSSGRP00000005927	ENSSGRP00000004151	E3 ubiquitin-protein ligase BRE1A-like.	annotation not available	0.752