(5 nodes) rDNA heterochromatin network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107565065	NAD-dependent protein deacetylase sirtuin-1-like isoform X1. (501 aa)
	ENSSGRP00000104985	annotation not available (146 aa)
	LOC107562394	NAD-dependent protein deacetylase sirtuin-1-like. (642 aa)
	ENSSGRP00000028857	annotation not available (128 aa)
	ENSSGRP00000007976	annotation not available (489 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000007976	ENSSGRP00000104985	ENSSGRP00000007976	ENSSGRP00000104985	annotation not available	annotation not available	0.859
ENSSGRP00000007976	LOC107562394	ENSSGRP00000007976	ENSSGRP00000017436	annotation not available	NAD-dependent protein deacetylase sirtuin-1-like.	0.859
ENSSGRP00000007976	LOC107565065	ENSSGRP00000007976	ENSSGRP00000104983	annotation not available	NAD-dependent protein deacetylase sirtuin-1-like isoform X1.	0.859
ENSSGRP00000028857	ENSSGRP00000104985	ENSSGRP00000028857	ENSSGRP00000104985	annotation not available	annotation not available	0.859
ENSSGRP00000028857	LOC107562394	ENSSGRP00000028857	ENSSGRP00000017436	annotation not available	NAD-dependent protein deacetylase sirtuin-1-like.	0.859
ENSSGRP00000028857	LOC107565065	ENSSGRP00000028857	ENSSGRP00000104983	annotation not available	NAD-dependent protein deacetylase sirtuin-1-like isoform X1.	0.859
ENSSGRP00000104985	ENSSGRP00000007976	ENSSGRP00000104985	ENSSGRP00000007976	annotation not available	annotation not available	0.859
ENSSGRP00000104985	ENSSGRP00000028857	ENSSGRP00000104985	ENSSGRP00000028857	annotation not available	annotation not available	0.859
LOC107562394	ENSSGRP00000007976	ENSSGRP00000017436	ENSSGRP00000007976	NAD-dependent protein deacetylase sirtuin-1-like.	annotation not available	0.859
LOC107562394	ENSSGRP00000028857	ENSSGRP00000017436	ENSSGRP00000028857	NAD-dependent protein deacetylase sirtuin-1-like.	annotation not available	0.859
LOC107562394	LOC107565065	ENSSGRP00000017436	ENSSGRP00000104983	NAD-dependent protein deacetylase sirtuin-1-like.	NAD-dependent protein deacetylase sirtuin-1-like isoform X1.	0.900
LOC107565065	ENSSGRP00000007976	ENSSGRP00000104983	ENSSGRP00000007976	NAD-dependent protein deacetylase sirtuin-1-like isoform X1.	annotation not available	0.859
LOC107565065	ENSSGRP00000028857	ENSSGRP00000104983	ENSSGRP00000028857	NAD-dependent protein deacetylase sirtuin-1-like isoform X1.	annotation not available	0.859
LOC107565065	LOC107562394	ENSSGRP00000104983	ENSSGRP00000017436	NAD-dependent protein deacetylase sirtuin-1-like isoform X1.	NAD-dependent protein deacetylase sirtuin-1-like.	0.900