(16 nodes) Nucleotide-excision repair, DNA incision network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Bivm	Basic immunoglobulin-like variable motif-containing protein. (502 aa)
	ENSSGRP00000000773	LOW QUALITY PROTEIN: uncharacterized protein LOC107565010. (530 aa)
	ENSSGRP00000001301	Excision repair cross-complementation group 4. (793 aa)
	ogg1	N-glycosylase/DNA lyase. (396 aa)
	ENSSGRP00000005593	annotation not available (240 aa)
	ENSSGRP00000049789	annotation not available (141 aa)
	ENSSGRP00000060780	TFIIH basal transcription factor complex helicase XPB subunit-like. (780 aa)
	ercc4	DNA excision repair protein ERCC-4. (890 aa)
	ENSSGRP00000077727	Excision repair cross-complementation group 2. (678 aa)
	ercc5	DNA repair protein complementing XP-G cells isoform X1. (1051 aa)
	LOC107601732	TFIIH basal transcription factor complex helicase XPD subunit. (783 aa)
	ENSSGRP00000083556	Nth-like DNA glycosylase 1. (251 aa)
	ENSSGRP00000095199	Uncharacterized protein LOC107557956. (523 aa)
	ercc1	DNA excision repair protein ERCC-1. (341 aa)
	ENSSGRP00000105732	DNA excision repair protein ERCC-1-like. (334 aa)
	ENSSGRP00000107977	LOW QUALITY PROTEIN: TFIIH basal transcription factor complex helicase XPB subunit-like. (736 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bivm	ENSSGRP00000000773	ENSSGRP00000031749	ENSSGRP00000000773	Basic immunoglobulin-like variable motif-containing protein.	LOW QUALITY PROTEIN: uncharacterized protein LOC107565010.	0.865
Bivm	ENSSGRP00000001301	ENSSGRP00000031749	ENSSGRP00000001301	Basic immunoglobulin-like variable motif-containing protein.	Excision repair cross-complementation group 4.	0.932
Bivm	ENSSGRP00000005593	ENSSGRP00000031749	ENSSGRP00000005593	Basic immunoglobulin-like variable motif-containing protein.	annotation not available	0.865
Bivm	ENSSGRP00000049789	ENSSGRP00000031749	ENSSGRP00000049789	Basic immunoglobulin-like variable motif-containing protein.	annotation not available	0.671
Bivm	ENSSGRP00000060780	ENSSGRP00000031749	ENSSGRP00000060780	Basic immunoglobulin-like variable motif-containing protein.	TFIIH basal transcription factor complex helicase XPB subunit-like.	0.984
Bivm	ENSSGRP00000077727	ENSSGRP00000031749	ENSSGRP00000077727	Basic immunoglobulin-like variable motif-containing protein.	Excision repair cross-complementation group 2.	0.977
Bivm	ENSSGRP00000083556	ENSSGRP00000031749	ENSSGRP00000083556	Basic immunoglobulin-like variable motif-containing protein.	Nth-like DNA glycosylase 1.	0.794
Bivm	ENSSGRP00000095199	ENSSGRP00000031749	ENSSGRP00000095199	Basic immunoglobulin-like variable motif-containing protein.	Uncharacterized protein LOC107557956.	0.865
Bivm	ENSSGRP00000105732	ENSSGRP00000031749	ENSSGRP00000105732	Basic immunoglobulin-like variable motif-containing protein.	DNA excision repair protein ERCC-1-like.	0.920
Bivm	ENSSGRP00000107977	ENSSGRP00000031749	ENSSGRP00000107977	Basic immunoglobulin-like variable motif-containing protein.	LOW QUALITY PROTEIN: TFIIH basal transcription factor complex helicase XPB subunit-like.	0.984
Bivm	LOC107601732	ENSSGRP00000031749	ENSSGRP00000080870	Basic immunoglobulin-like variable motif-containing protein.	TFIIH basal transcription factor complex helicase XPD subunit.	0.977
Bivm	ercc1	ENSSGRP00000031749	ENSSGRP00000105498	Basic immunoglobulin-like variable motif-containing protein.	DNA excision repair protein ERCC-1.	0.920
Bivm	ercc4	ENSSGRP00000031749	ENSSGRP00000068441	Basic immunoglobulin-like variable motif-containing protein.	DNA excision repair protein ERCC-4.	0.932
Bivm	ogg1	ENSSGRP00000031749	ENSSGRP00000002829	Basic immunoglobulin-like variable motif-containing protein.	N-glycosylase/DNA lyase.	0.671
ENSSGRP00000000773	Bivm	ENSSGRP00000000773	ENSSGRP00000031749	LOW QUALITY PROTEIN: uncharacterized protein LOC107565010.	Basic immunoglobulin-like variable motif-containing protein.	0.865
ENSSGRP00000000773	ENSSGRP00000001301	ENSSGRP00000000773	ENSSGRP00000001301	LOW QUALITY PROTEIN: uncharacterized protein LOC107565010.	Excision repair cross-complementation group 4.	0.976
ENSSGRP00000000773	ENSSGRP00000049789	ENSSGRP00000000773	ENSSGRP00000049789	LOW QUALITY PROTEIN: uncharacterized protein LOC107565010.	annotation not available	0.605
ENSSGRP00000000773	ENSSGRP00000060780	ENSSGRP00000000773	ENSSGRP00000060780	LOW QUALITY PROTEIN: uncharacterized protein LOC107565010.	TFIIH basal transcription factor complex helicase XPB subunit-like.	0.962
ENSSGRP00000000773	ENSSGRP00000077727	ENSSGRP00000000773	ENSSGRP00000077727	LOW QUALITY PROTEIN: uncharacterized protein LOC107565010.	Excision repair cross-complementation group 2.	0.975
ENSSGRP00000000773	ENSSGRP00000083556	ENSSGRP00000000773	ENSSGRP00000083556	LOW QUALITY PROTEIN: uncharacterized protein LOC107565010.	Nth-like DNA glycosylase 1.	0.691