(8 nodes) Positive regulation of heterotypic cell-cell adhesion network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000029484	annotation not available (269 aa)
	ENSSGRP00000006394	annotation not available (243 aa)
	ENSSGRP00000006399	annotation not available (125 aa)
	Skap1	Src kinase associated phosphoprotein 1. (383 aa)
	LOC107564337	Fibrinogen beta chain-like isoform X1. (487 aa)
	LOC107582292	Lymphotoxin alpha (TNF superfamily, member 1). (244 aa)
	ENSSGRP00000041684	Fibrinogen beta chain. (249 aa)
	ENSSGRP00000073907	Interleukin-1 beta-like. (260 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000006394	ENSSGRP00000006399	ENSSGRP00000006394	ENSSGRP00000006399	annotation not available	annotation not available	0.822
ENSSGRP00000006394	ENSSGRP00000029484	ENSSGRP00000006394	ENSSGRP00000029484	annotation not available	annotation not available	0.822
ENSSGRP00000006394	ENSSGRP00000073907	ENSSGRP00000006394	ENSSGRP00000073907	annotation not available	Interleukin-1 beta-like.	0.822
ENSSGRP00000006399	ENSSGRP00000006394	ENSSGRP00000006399	ENSSGRP00000006394	annotation not available	annotation not available	0.822
ENSSGRP00000006399	LOC107582292	ENSSGRP00000006399	ENSSGRP00000034096	annotation not available	Lymphotoxin alpha (TNF superfamily, member 1).	0.822
ENSSGRP00000029484	ENSSGRP00000006394	ENSSGRP00000029484	ENSSGRP00000006394	annotation not available	annotation not available	0.822
ENSSGRP00000029484	LOC107582292	ENSSGRP00000029484	ENSSGRP00000034096	annotation not available	Lymphotoxin alpha (TNF superfamily, member 1).	0.822
ENSSGRP00000073907	ENSSGRP00000006394	ENSSGRP00000073907	ENSSGRP00000006394	Interleukin-1 beta-like.	annotation not available	0.822
ENSSGRP00000073907	LOC107582292	ENSSGRP00000073907	ENSSGRP00000034096	Interleukin-1 beta-like.	Lymphotoxin alpha (TNF superfamily, member 1).	0.822
LOC107582292	ENSSGRP00000006399	ENSSGRP00000034096	ENSSGRP00000006399	Lymphotoxin alpha (TNF superfamily, member 1).	annotation not available	0.822
LOC107582292	ENSSGRP00000029484	ENSSGRP00000034096	ENSSGRP00000029484	Lymphotoxin alpha (TNF superfamily, member 1).	annotation not available	0.822
LOC107582292	ENSSGRP00000073907	ENSSGRP00000034096	ENSSGRP00000073907	Lymphotoxin alpha (TNF superfamily, member 1).	Interleukin-1 beta-like.	0.822