(29 nodes) High-density lipoprotein particle network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000053415	annotation not available (191 aa)
	LOC107574561	Serum amyloid A-5 protein-like. (129 aa)
	ENSSGRP00000019411	Apolipoprotein A-I-1-like. (351 aa)
	ENSSGRP00000019153	Hepatic triacylglycerol lipase-like. (438 aa)
	LOC107582089	Apolipoprotein Eb-like. (302 aa)
	ENSSGRP00000015803	Apolipoprotein A-I-like. (155 aa)
	LOC107582086	Apolipoprotein A-I-like. (255 aa)
	LOC107596115	Apolipoprotein A-I. (262 aa)
	LOC107599551	Apolipoprotein Eb-like. (269 aa)
	LOC107599552	Apolipoprotein Eb-like. (269 aa)
	LOC107591316	Serum amyloid A-5 protein-like isoform X1. (121 aa)
	ENSSGRP00000021093	annotation not available (113 aa)
	ENSSGRP00000051806	annotation not available (422 aa)
	lcat	Phosphatidylcholine-sterol acyltransferase. (438 aa)
	LOC107560511	Phospholipid transfer protein-like. (498 aa)
	ENSSGRP00000046515	Phospholipid transfer protein-like. (526 aa)
	LOC107596479	Apolipoprotein A-I-like. (255 aa)
	apom	Apolipoprotein M. (191 aa)
	LOC107551276	Apolipoprotein A-I-1-like isoform X1. (261 aa)
	LOC107582169	Apolipoprotein A-I-like isoform X1. (255 aa)
	LOC107599208	Apolipoprotein A-I-like. (262 aa)
	LOC107565590	Apolipoprotein Eb-like. (269 aa)
	ENSSGRP00000085777	Lecithin-cholesterol acyltransferase. (393 aa)
	LOC107595129	Apolipoprotein Eb. (281 aa)
	ENSSGRP00000079108	Apolipoprotein Eb-like. (184 aa)
	LOC107595122	Apolipoprotein A-I-like. (158 aa)
	LOC107595112	Apolipoprotein A-I-like. (255 aa)
	ENSSGRP00000073771	Hepatic triacylglycerol lipase-like. (499 aa)
	lipc	Hepatic triacylglycerol lipase isoform X1. (508 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000015803	ENSSGRP00000046515	ENSSGRP00000015803	ENSSGRP00000046515	Apolipoprotein A-I-like.	Phospholipid transfer protein-like.	0.731
ENSSGRP00000015803	ENSSGRP00000051806	ENSSGRP00000015803	ENSSGRP00000051806	Apolipoprotein A-I-like.	annotation not available	0.773
ENSSGRP00000015803	ENSSGRP00000053415	ENSSGRP00000015803	ENSSGRP00000053415	Apolipoprotein A-I-like.	annotation not available	0.480
ENSSGRP00000015803	ENSSGRP00000085777	ENSSGRP00000015803	ENSSGRP00000085777	Apolipoprotein A-I-like.	Lecithin-cholesterol acyltransferase.	0.861
ENSSGRP00000015803	LOC107560511	ENSSGRP00000015803	ENSSGRP00000048798	Apolipoprotein A-I-like.	Phospholipid transfer protein-like.	0.731
ENSSGRP00000015803	LOC107565590	ENSSGRP00000015803	ENSSGRP00000087566	Apolipoprotein A-I-like.	Apolipoprotein Eb-like.	0.672
ENSSGRP00000015803	LOC107582089	ENSSGRP00000015803	ENSSGRP00000015810	Apolipoprotein A-I-like.	Apolipoprotein Eb-like.	0.672
ENSSGRP00000015803	LOC107595129	ENSSGRP00000015803	ENSSGRP00000079176	Apolipoprotein A-I-like.	Apolipoprotein Eb.	0.672
ENSSGRP00000015803	LOC107599551	ENSSGRP00000015803	ENSSGRP00000064544	Apolipoprotein A-I-like.	Apolipoprotein Eb-like.	0.672
ENSSGRP00000015803	LOC107599552	ENSSGRP00000015803	ENSSGRP00000064541	Apolipoprotein A-I-like.	Apolipoprotein Eb-like.	0.672
ENSSGRP00000015803	apom	ENSSGRP00000015803	ENSSGRP00000044194	Apolipoprotein A-I-like.	Apolipoprotein M.	0.480
ENSSGRP00000015803	lcat	ENSSGRP00000015803	ENSSGRP00000050852	Apolipoprotein A-I-like.	Phosphatidylcholine-sterol acyltransferase.	0.861
ENSSGRP00000019153	ENSSGRP00000046515	ENSSGRP00000019153	ENSSGRP00000046515	Hepatic triacylglycerol lipase-like.	Phospholipid transfer protein-like.	0.485
ENSSGRP00000019153	ENSSGRP00000051806	ENSSGRP00000019153	ENSSGRP00000051806	Hepatic triacylglycerol lipase-like.	annotation not available	0.629
ENSSGRP00000019153	ENSSGRP00000085777	ENSSGRP00000019153	ENSSGRP00000085777	Hepatic triacylglycerol lipase-like.	Lecithin-cholesterol acyltransferase.	0.418
ENSSGRP00000019153	LOC107560511	ENSSGRP00000019153	ENSSGRP00000048798	Hepatic triacylglycerol lipase-like.	Phospholipid transfer protein-like.	0.485
ENSSGRP00000019153	lcat	ENSSGRP00000019153	ENSSGRP00000050852	Hepatic triacylglycerol lipase-like.	Phosphatidylcholine-sterol acyltransferase.	0.418
ENSSGRP00000019411	ENSSGRP00000046515	ENSSGRP00000019411	ENSSGRP00000046515	Apolipoprotein A-I-1-like.	Phospholipid transfer protein-like.	0.640
ENSSGRP00000019411	ENSSGRP00000051806	ENSSGRP00000019411	ENSSGRP00000051806	Apolipoprotein A-I-1-like.	annotation not available	0.611
ENSSGRP00000019411	ENSSGRP00000085777	ENSSGRP00000019411	ENSSGRP00000085777	Apolipoprotein A-I-1-like.	Lecithin-cholesterol acyltransferase.	0.619