(4 nodes) t-UTP complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107553989	U3 small nucleolar RNA-associated protein 4 homolog. (685 aa)
	ENSSGRP00000058456	U3 small nucleolar RNA-associated protein 10. (1425 aa)
	Heatr1	U3 small nucleolar RNA-associated protein 10. (2153 aa)
	LOC107583899	U3 small nucleolar RNA-associated protein 4 homolog. (630 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000058456	Heatr1	ENSSGRP00000058456	ENSSGRP00000091897	U3 small nucleolar RNA-associated protein 10.	U3 small nucleolar RNA-associated protein 10.	0.900
ENSSGRP00000058456	LOC107553989	ENSSGRP00000058456	ENSSGRP00000066255	U3 small nucleolar RNA-associated protein 10.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
ENSSGRP00000058456	LOC107583899	ENSSGRP00000058456	ENSSGRP00000084061	U3 small nucleolar RNA-associated protein 10.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
Heatr1	ENSSGRP00000058456	ENSSGRP00000091897	ENSSGRP00000058456	U3 small nucleolar RNA-associated protein 10.	U3 small nucleolar RNA-associated protein 10.	0.900
Heatr1	LOC107553989	ENSSGRP00000091897	ENSSGRP00000066255	U3 small nucleolar RNA-associated protein 10.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
Heatr1	LOC107583899	ENSSGRP00000091897	ENSSGRP00000084061	U3 small nucleolar RNA-associated protein 10.	U3 small nucleolar RNA-associated protein 4 homolog.	0.999
LOC107553989	ENSSGRP00000058456	ENSSGRP00000066255	ENSSGRP00000058456	U3 small nucleolar RNA-associated protein 4 homolog.	U3 small nucleolar RNA-associated protein 10.	0.999
LOC107553989	Heatr1	ENSSGRP00000066255	ENSSGRP00000091897	U3 small nucleolar RNA-associated protein 4 homolog.	U3 small nucleolar RNA-associated protein 10.	0.999
LOC107553989	LOC107583899	ENSSGRP00000066255	ENSSGRP00000084061	U3 small nucleolar RNA-associated protein 4 homolog.	U3 small nucleolar RNA-associated protein 4 homolog.	0.900
LOC107583899	ENSSGRP00000058456	ENSSGRP00000084061	ENSSGRP00000058456	U3 small nucleolar RNA-associated protein 4 homolog.	U3 small nucleolar RNA-associated protein 10.	0.999
LOC107583899	Heatr1	ENSSGRP00000084061	ENSSGRP00000091897	U3 small nucleolar RNA-associated protein 4 homolog.	U3 small nucleolar RNA-associated protein 10.	0.999
LOC107583899	LOC107553989	ENSSGRP00000084061	ENSSGRP00000066255	U3 small nucleolar RNA-associated protein 4 homolog.	U3 small nucleolar RNA-associated protein 4 homolog.	0.900